| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2571 |
|---|
| Symbol | uvrD |
|---|
| ID | 5136457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2720616 |
|---|
| End bp | 2722787 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640534020 |
|---|
| Product | DNA-dependent helicase II |
|---|
| Protein accession | YP_001218450 |
|---|
| Protein GI | 147675309 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATC CCTCTCTATT GCTCGACGGT CTCAACGATA AACAACGCGA AGCGGTGGCA
GCGCCACTGG AAAACTTACT GATTTTGGCC GGTGCTGGCA GTGGTAAAAC CCGCGTACTG
GTGCACCGGA TTGCGTGGCT GATGTCGGTG GAAGAAGCCT CACCGTTTTC GGTGATGGCG
GTGACCTTTA CCAACAAAGC TGCAGCCGAA ATGCGTGGCC GAATTGAAGA GCTGATGCAT
GGCACCGCCT CTGGCATGTG GTGTGGTACT TTCCACGGTA TTTGCCATCG TATTCTGCGC
GCCCATTATC TCGACGCTAA GCTGCTGGAA GATTTTCAGA TCATCGACAG TGACGATCAG
CAGCGTCTGC TCAAACGCCT CATCAAAGCG CACAATCTGG ATGATAAACA GTGGCCGGCA
CGCCAAGTCG CGTGGTGGAT CAACAATCAA AAAGATGAAG GATTGCGCCC GACGCACATC
AACGCCTTTG ATCCGGTTAC TCAAACTTAT CTCAAGCTGT ACACCGCTTA CCAAGAAGCG
TGCGATCGCG CCGGCTTGGT CGATTTCGCC GAAATTTTGC TGCGCGCCCT AGAGCTTCTG
CGTGGTAATC AGCACATTCG CGAGCATTAT CAGGCGCGCT TTAAGCACAT TTTGGTCGAT
GAATTCCAAG ACACCAACGC GATTCAGTAC GCGTGGCTAC GTATGATGGC GGGTGCTCAG
TCGAACGTGA TGATCGTGGG TGACGATGAC CAGTCGATTT ACGGCTGGCG TGGCGCGCGA
GTGGAAAACA TCGAAAAATT TACCCGCGAA TTCCCGAGCG TGAATACCAT TCGACTGGAG
CAAAACTACC GCTCCACCAA AACCATTTTG GAAGCCTCAA ATACACTGAT CGCCAATAAT
AGCGAGCGGA TGGGCAAGCA GCTATGGACT GACGGTTTGG TCGGCGAACC CATTTCGGTG
TACTCGGCGT ATAACGAGCT CGATGAAGCA CGCTTTGTGG TCAGCAAAAT CAAAGGCTGG
CAGGAGCAGG GCGGCACACT GACCGATTGC GCGATCTTGT ATCGCAACAA CGCCCAGTCG
CGGGTATTGG AAGAGGCATT ATTGCAAGCG AGTTTGGCCT ACCGCATTTA TGGCGGGATG
CGCTTTTTCG AGCGCCAAGA GATCAAAGAT GCGCTGAGTT ATCTGCGTTT GATTAATAAC
CGCAATGACG ACACCGCCTT TGAGCGAGTG ATTAATACGC CGCCGCGCGG TTTGGGTGAT
AAAACCCTAG AGACCATTCG CTTTGCCGCG CGCGATCGTG GCTGCACCTT GTGGGATGCC
AGTGTCGGTC TGCTCAATGA CCAAGTGCTC ACTGGGCGTG CTGCGAGCGC GCTGAGCCGC
TTTGTTGAAC TGATCAACGC CTTGGAAGAG GAAGGCATCG ACATGCCGCT GCATGTGCTC
ACGGACCACG CGGTAAAAAC CTCTGGTCTG CTGGAGATGT ATCAGCAAGA AAAAGGCGAA
AAATCCAAAG CACGGATTGA AAACTTGGAA GAGCTGGTGA CGGCGACGCG CCAGTTTGAA
AAGCCAGAAG AAGCGCAAGA GATGACCATG CTGACCGCAT TTTTGACCCA TGCGGCACTG
GAAGCCGGTG AAGGTCAAGC CGATGAGCAT GATGATGCGG TACAACTGAT GACCTTGCAC
AGTGCCAAAG GATTAGAGTT TCCGCTGGTG TTTATGGTCG GTGTGGAAGA GGGTATGTTC
CCGAGCCAAA TGTCTGCCGA AGAGGCGGGG CGTCTCGAAG AGGAGCGTCG CCTGTGTTAC
GTCGGTATGA CCCGCGCGAT GCAAAAGCTC TACATCACCT ACGCGGAAAT GCGCCGTTTG
TACGGGCAAG ATAAGTATCA CAAACCCTCA CGCTTTATTC GTGAACTGCC AGAAGGCTGT
TTGGATGAAG TGCGCATGAA GGCGCAAGTC AGCCGTCCAA CCAGTACAGG GCGCTTTAGC
CAAACCGTAG TCAAAGAAAG CTTTAACGAA ACCGGTTTTA ATTTGGGCTC ACGAGTCCGT
CACCCGAAAT TTGGTGAAGG CACCATCATT AACTTTGAAG GCAGTGGCCC GCAAAGCCGA
GTGCAAGTGG CGTTTAATGG CGAAGGTATT AAGTGGTTAG TCACGGCTTA CGCGAGATTA
GAGAAGGTGT AG
|
|---|
| Protein sequence | MIDPSLLLDG LNDKQREAVA APLENLLILA GAGSGKTRVL VHRIAWLMSV EEASPFSVMA
VTFTNKAAAE MRGRIEELMH GTASGMWCGT FHGICHRILR AHYLDAKLLE DFQIIDSDDQ
QRLLKRLIKA HNLDDKQWPA RQVAWWINNQ KDEGLRPTHI NAFDPVTQTY LKLYTAYQEA
CDRAGLVDFA EILLRALELL RGNQHIREHY QARFKHILVD EFQDTNAIQY AWLRMMAGAQ
SNVMIVGDDD QSIYGWRGAR VENIEKFTRE FPSVNTIRLE QNYRSTKTIL EASNTLIANN
SERMGKQLWT DGLVGEPISV YSAYNELDEA RFVVSKIKGW QEQGGTLTDC AILYRNNAQS
RVLEEALLQA SLAYRIYGGM RFFERQEIKD ALSYLRLINN RNDDTAFERV INTPPRGLGD
KTLETIRFAA RDRGCTLWDA SVGLLNDQVL TGRAASALSR FVELINALEE EGIDMPLHVL
TDHAVKTSGL LEMYQQEKGE KSKARIENLE ELVTATRQFE KPEEAQEMTM LTAFLTHAAL
EAGEGQADEH DDAVQLMTLH SAKGLEFPLV FMVGVEEGMF PSQMSAEEAG RLEEERRLCY
VGMTRAMQKL YITYAEMRRL YGQDKYHKPS RFIRELPEGC LDEVRMKAQV SRPTSTGRFS
QTVVKESFNE TGFNLGSRVR HPKFGEGTII NFEGSGPQSR VQVAFNGEGI KWLVTAYARL
EKV
|
|---|
| |