Gene VC0395_A2554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2554 
Symbol 
ID5136903 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp2704337 
End bp2704933 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content42% 
IMG OID640534003 
ProductTetR family transcriptional regulator 
Protein accessionYP_001218438 
Protein GI147675641 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.0000000000394239 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCAGAGAA ATGTGATGTC TGAAATAGTG TACGGCGATA AACAGCTCCA AATCCTTATC 
GCGGCTGAAA AACTGATTGC AGAACAGGGC TTTCAAGGGC TCTCGATGCA TAAAGTGGCG 
AAAGCAGCGA ATATGGCAAC CGGAACGATT TATCGTTACT TCCGCGATAA AGATCATCTC 
TTGATTGAAG TGCGTTTGCA CGTTAGTCAA AAAATCGCCG AAGCCGTACA AGCTAATCTT 
AGAGATGACA TGTCTTTGCA AGAACGCTTC CGTACTATGT GGCTGAATAT TTGGACGTTG 
GCTGGCTCTT GTCGTGACAT TATTAGTAAT CGAGTGCAGT ATGAGTCTTT ACCAACAACA 
ACTTGTTGCA ATGTAAGGGA ACTAGAGCAA AAAATGTTTG CCAAAGTCGA ACTGTTGTTC 
GACCAAGGAA AGCAGCAGGG AATTTTCAAA CCTCTCGATA ACCATCTTCT TTCTGCGTTG 
AGTTTTGAAA CAACCGTCAC TCTTGCTCGT CAATACGCTT TAGGTTTTTA TCAACTGGAT 
GATTCAACTC TCGATGCAAT GATTCAAGCC AGTTGGGATG CAATTACTCA ACACTAA
 
Protein sequence
MQRNVMSEIV YGDKQLQILI AAEKLIAEQG FQGLSMHKVA KAANMATGTI YRYFRDKDHL 
LIEVRLHVSQ KIAEAVQANL RDDMSLQERF RTMWLNIWTL AGSCRDIISN RVQYESLPTT 
TCCNVRELEQ KMFAKVELLF DQGKQQGIFK PLDNHLLSAL SFETTVTLAR QYALGFYQLD 
DSTLDAMIQA SWDAITQH