| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2514 |
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| Symbol | yidC |
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| ID | 5137027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2665431 |
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| End bp | 2667056 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640533965 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_001218407 |
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| Protein GI | 147674272 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000000130871 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTCTC AACGTAATAT CTTGTTAATC GCTCTGGCGC TGGTTTCTTT CCTACTGTTT
CAACAATGGC AAGTAGCGAA GAACCCTGCA CCGCAAGCGA CACAGCAGGC CCAATCCACA
GGCGCAGCTC CTGCTCCTTC ATTTTCCGAT GAGTTAGATC CAACGCCTGC ACAAAATGTG
GCGGCGAAGG CCAAGACCAT TACCGTCTCA ACCGATGTAC TGACTCTGTC TATTGATACG
CTCGGCGGCG ATGTGGTTAG CGCAAAACTG AATCAATACT CAGAAGAGCT CAATTCGCCT
GAGTCTTTTG TCTTGTTGCA AAACACCCAA GGCCATCAGT TTATTGCTCA AAGTGGTTTA
GTCGGCCCAC AAGGCATTGA CGTCACTAGC AATAATCGTC CCGCTTACCA AGTGAGTGCC
GATAGTTTCA CTCTGGCCGA AGGCCAAGAT GAACTGCGCA TTCCTATGAC CTATCAAGCC
AATGGCATTG ACTACACGAA AACCTTCATT CTTAAGCGTG GTAGCTACGC CGTGGATGTG
GTGTTTGACG TCGCCAATAA CTCAGGTAGC GAAGCCACAC TAGGTATGTA TGCTCACCTG
CGCCAAAATC TGCTGGATTC TGGTGGCAAC CTCGCCATGC CAACTTACCG TGGTGGTGCT
TACTCAACCA GCGATGTGCG TTACAAGAAG TACAGCTTCG ACGACATGAA AGATCGCAAC
CTCAGTGCAC CAAACGATGT GACGGTAAAC TGGGTCGCGA TGATCCAGCA CTACTTCGCT
TCAGCATGGA TCCCACGTGA TGAGCCGCAA GCACAGCTTT ACTCACGCGT TATCAATAAT
TTAGGTGATA TGGGTATCCG TACACCAAAC AAAACCATTG CCAACGGTGA TAAAGCAGAG
TTTGAAGCAA CCTTATGGGT AGGCCCAAAA CTGCAAGACC AAATGGCTGC AACAGCGCCT
AATCTTGATC TGGTGGTTGA TTATGGTTGG TTGTGGTTCA TTGCTAAGCC ACTGCACTGG
TTGCTGTCTG TGATTCAGAC CTTTGTTGGC AACTGGGGTG TGGCCATCAT CTGCTTAACC
TTTATTGTTC GTGGTGCGAT GTACCCACTG ACCAAAGCAC AGTACACCTC AATGGCGAAA
ATGCGCATGC TGCAACCAAA ACTGCAAGCG ATGCGTGAGC GGATTGGCGA TGATCGCCAG
CGCATGAGCC AAGAGATGAT GGAGCTGTAT AAGAAAGAGA AAGTAAACCC ACTGGGTGGC
TGTCTCCCTA TCCTTCTGCA AATGCCGATT TTCATTGCGC TGTACTGGGC ACTGATGGAG
TCGGTAGAGC TGCGTCACTC TCCATTCTTT GGTTGGATTC ATGACTTGTC CGCGCAAGAT
CCTTACTACA TCTTGCCACT GCTGATGGGT GCGAGCATGT TCGTTATCCA GAAGATGAGC
CCGACCACGA TCACCGATCC AATGCAACAG AAGATCATGA CCTTCATGCC AGTGATGTTC
ACTTTCTTCT TCCTGTGGTT CCCATCAGGC TTGGTTCTGT ACTGGTTGGT GTCGAACATC
GTAACGCTCA TCCAGCAAAC GCTGATCTAC AAAGCGCTAG AGAAAAAAGG CTTACACTCC
AAGTAA
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| Protein sequence | MDSQRNILLI ALALVSFLLF QQWQVAKNPA PQATQQAQST GAAPAPSFSD ELDPTPAQNV
AAKAKTITVS TDVLTLSIDT LGGDVVSAKL NQYSEELNSP ESFVLLQNTQ GHQFIAQSGL
VGPQGIDVTS NNRPAYQVSA DSFTLAEGQD ELRIPMTYQA NGIDYTKTFI LKRGSYAVDV
VFDVANNSGS EATLGMYAHL RQNLLDSGGN LAMPTYRGGA YSTSDVRYKK YSFDDMKDRN
LSAPNDVTVN WVAMIQHYFA SAWIPRDEPQ AQLYSRVINN LGDMGIRTPN KTIANGDKAE
FEATLWVGPK LQDQMAATAP NLDLVVDYGW LWFIAKPLHW LLSVIQTFVG NWGVAIICLT
FIVRGAMYPL TKAQYTSMAK MRMLQPKLQA MRERIGDDRQ RMSQEMMELY KKEKVNPLGG
CLPILLQMPI FIALYWALME SVELRHSPFF GWIHDLSAQD PYYILPLLMG ASMFVIQKMS
PTTITDPMQQ KIMTFMPVMF TFFFLWFPSG LVLYWLVSNI VTLIQQTLIY KALEKKGLHS
K
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