Gene VC0395_A2510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2510 
Symbol 
ID5137544 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2663051 
End bp2663722 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content50% 
IMG OID640533961 
Productamino acid ABC transporter, permease protein 
Protein accessionYP_001218403 
Protein GI147675477 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000045662 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTTTTG ACTTTCACTA CATGCTTGAG CTGCTGCCAA TCTTGCTCAA ATATCTGGGT 
ACGACTCTGG AAATGGCCAG CTGGGGGCTA GTTTTCGCGC TGATTTTGGC GCTGTTTCTA
GCCAATATTC GGGTATTCAA AGTGCCAGTG TTGGATCCCC TTAGCCAGCT CTACATCAGT
TTTTTCCGCG GAACGCCGCT GCTTGTACAG TTATTTTTGC TCTACTACGG TTTACCGCAA
GTCTTCCCCC TGTTGGTTGG GCTTGATGCA TTCAGCGCTG CGGTGATCGG TTTAACGCTA
CATTTTGCCG CTTACATGGC GGAAAGCATT CGCGCCGCGA TCATCGGTAT TGATCGCAGC
CAAATGGAAG CCAGCTTATC CGTCGGAATG ACCACTTCTC AGGCGATGCG CCGGATCATT
TTGCCACAAG CCACACGCGT TGCTCTGCCT TCATTGATGA ACTATTTCAT TGATATGATC
AAATCAACCT CCCTCGCCTT TACCCTTGGC GTGGCTGAGA TCATGGCTAA AGCGCAGATG
GAAGCTTCAT CCAGTTTCCG TTTTTTCGAA GCCTTCTTGG CGGTAGCCCT CATCTATTGG
GTGGTGGTTT TGGTGCTCAC TCGCCTGCAA TCTTGGGCAG AGCAGAAACT CAATAAGGCG
TACGCACGAT GA
 
Protein sequence
MGFDFHYMLE LLPILLKYLG TTLEMASWGL VFALILALFL ANIRVFKVPV LDPLSQLYIS 
FFRGTPLLVQ LFLLYYGLPQ VFPLLVGLDA FSAAVIGLTL HFAAYMAESI RAAIIGIDRS
QMEASLSVGM TTSQAMRRII LPQATRVALP SLMNYFIDMI KSTSLAFTLG VAEIMAKAQM
EASSSFRFFE AFLAVALIYW VVVLVLTRLQ SWAEQKLNKA YAR