Gene VC0395_A2427 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2427 
Symbol 
ID5135948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2583016 
End bp2583768 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content48% 
IMG OID640533879 
Producthypothetical protein 
Protein accessionYP_001218327 
Protein GI147675120 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0805] Sec-independent protein secretion pathway component TatC 
TIGRFAM ID[TIGR00945] Twin arginine targeting (Tat) protein translocase TatC 


Plasmid Coverage information

Num covering plasmid clones63 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTCCG TTGAACAGAC CCAACCTTTG ATCAGCCATT TGTTGGAACT GCGTAATCGC 
CTACTCAAAG CGGTGGCGGC TGTGGTGGTG ATATTTATTG GCTTGATCTA TTTCTCGAAT
GAAATTTACG AGTTTGTCTC AAAACCCCTA GTCGAGCGAC TTCCCGCGGG CGCAACCATG
ATTGCGACCG ATGTGGCTTC ACCCTTTTTC ACGCCTTTAA AACTGACGTT GATTGCCGCG
GTGTTTCTCG CGGTGCCTTT CATTTTGTAT CAGGTGTGGG CTTTTGTGGC TCCCGGTTTA
TATAAGCACG AACGGCGTTT AATCTTCCCA CTGCTGGTCT CTAGCTCGCT GCTGTTTTAC
TGCGGTGTCG CGTTTGCCTA TTTTGTGGTG TTTCCGCTGG TGTTTGGATT TTTCACCGCC
ATTTCACTCG GTGGTGTGGA GTTCGCGACC GATATCGCGA GTTATCTCGA TTTTGTATTG
GCGCTGTTTC TAGCCTTTGG TATCGCGTTT GAAGTGCCAG TTGCGATCAT TCTGCTGTGC
TGGACGGGCG CAACCACGCC TAAAAGCCTA TCGGAAAAGC GTCCATACAT TATCGTTGGT
GCGTTTGTAG TTGGTATGTT ACTGACGCCG CCGGATATGA TTTCGCAAAC GCTACTCGCC
ATACCTATGT GCTTGTTGTT TGAAGTTGGT TTGTTCTTCG CTCGTTTTTA TACCCGTGAT
GAAGCCGATG AAGGACAAGA GGAAGAAGAA TAA
 
Protein sequence
MSSVEQTQPL ISHLLELRNR LLKAVAAVVV IFIGLIYFSN EIYEFVSKPL VERLPAGATM 
IATDVASPFF TPLKLTLIAA VFLAVPFILY QVWAFVAPGL YKHERRLIFP LLVSSSLLFY
CGVAFAYFVV FPLVFGFFTA ISLGGVEFAT DIASYLDFVL ALFLAFGIAF EVPVAIILLC
WTGATTPKSL SEKRPYIIVG AFVVGMLLTP PDMISQTLLA IPMCLLFEVG LFFARFYTRD
EADEGQEEEE