| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2371 |
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| Symbol | rpoH |
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| ID | 5137843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2528425 |
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| End bp | 2529285 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640533823 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_001218271 |
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| Protein GI | 147674371 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000000115405 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTAACC AAGCGTATCC AATGGCTCTT GTTTCCCAAG ACAGCTTAGA TAGCTACATC
CGTTCAGTAA ACGGTTACCC GATGCTGAGT GCTGATGAAG AGCGCGAGCT GGCAGAGCGA
TTACATTACA AAGGGGATAT CGATGCTGCG AAAGGCTTGA TCTTGTCGCA CCTACGATTT
GTTGTTCACG TTGCTCGTGG TTATTCCGGT TATGGCTTGC CAATGGCGGA CTTAGTGCAA
GAGGGCAATA TCGGTCTGAT GAAAGCGGTT AAACGCTTTA ACCCTGAGAT GGGGGTAAGA
CTGGTGTCGT TTGCGGTGCA CTGGATTAAA GCCGAAATTC ATGAATATGT GCTACGTAAC
TGGCGTATTG TGAAAATCGC CACCACCAAA GCACAGCGCA AACTGTTCTT TAATCTGCGT
AAATCGAAAA AACGCCTTGG CTGGTTTAAT AACGGCGAAG TCGAAACGGT AGCGCGCGAG
CTGGGTGTTG AGCCTGCTGA AGTGCGTGAA ATGGAATCTC GTCTGGCAGC CCAAGATGCT
GCGTTTGAGA TGTCCGCCGA GGATGACGAA AACGGCATGG CCTACACTGC GCCTGTGCTG
TACCTCGAAG ATAAGCACTC TGACTTAGCT GATAACCTAG AAGCCGAAAA CTGGGAAGCG
CATACCACAC AGCGCCTCAG CATGGCGCTG GCAAGTCTTG ATGAGCGTAG CCAACACATT
GTGCGTGCTC GTTGGTTGGA TGATGACAAC AAAACCACAC TGCAAGATTT GGCGGAAATG
TATGGTGTTT CTGCGGAGCG TATTCGTCAG CTTGAGAAAA ACGCCATGCG TAAGCTGAAA
GAAGCGGTGG GCGAGTTCTG A
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| Protein sequence | MTNQAYPMAL VSQDSLDSYI RSVNGYPMLS ADEERELAER LHYKGDIDAA KGLILSHLRF
VVHVARGYSG YGLPMADLVQ EGNIGLMKAV KRFNPEMGVR LVSFAVHWIK AEIHEYVLRN
WRIVKIATTK AQRKLFFNLR KSKKRLGWFN NGEVETVARE LGVEPAEVRE MESRLAAQDA
AFEMSAEDDE NGMAYTAPVL YLEDKHSDLA DNLEAENWEA HTTQRLSMAL ASLDERSQHI
VRARWLDDDN KTTLQDLAEM YGVSAERIRQ LEKNAMRKLK EAVGEF
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