Gene VC0395_A2342 details

Gene Information

• Locus tag: VC0395_A2342
• ID: 5135229
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 2496481
• End bp: 2498316
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 640533794
• Product: TonB-dependent receptor
• Protein accession: YP_001218242
• Protein GI: 147674843
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4206] Outer membrane cobalamin receptor protein
• TIGRFAM ID: [TIGR01779] TonB-dependent vitamin B12 receptor; [TIGR03304] outer membrane insertion C-terminal signal

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.499314
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAAAAT CAGCACTGGC GATCGCTCTA GCATCGCTGC TTACCCCTAT CTCTTATTTA 
CACGCCAACG AAGCACAACC TCAAGAAACG GTTGTTGTGA CGGCAAATCG TTTTGAGCAA 
AAGGCCAGTT CAACTTTGGC GGATGTGGAA ATCATTACCC GCCAAGATAT CGAACAAACT 
CAAGCTAAGA CATTGCCTGA GTTGTTACGT AGATTAACGG GTGTTCAGAT CACGCAAAAT 
GGTGGACGTG GTCAGTTAGC CTCTTTATTC GTACGTGGAA CAAGTTCAGA TCAAGTATTG 
GTATTAGTGG ATGGAATTCG TTTTGCTCGT GCTGCAAAAG GAGCGGTCGA TTTCAACCAA 
ATTCCACTAA CTTATGTTGA CCGTATTGAG TATGTGCGTG GCGCTCGAGC TTCGTTATAT 
GGATCTGAAG CGATTGGTGG TGTCATTAAC ATCATTACTA AAGCTCGTTC ACAACAACAA 
GGCACAACCG TAAGTGCTGG ACTGGGTTCA TTGGATTACC AAGAACTCAG TATTGCTTCT 
GGGGTTGCGA TTGGTGAAAA AGGCCAGATG AATGTGGCTT TGGGCACAGA GAGTGATAAA 
GGGTACAACG TTCGTCCAGT TCCTGGAGTG AATGATGGTG ATCGTCACGG TTTCAGGTCA 
GATAATGCGT TGTTGGGTTA CGTGCACCAA TTTGATGAGT CTTGGTCTTT GTTTGCCAAT 
GCCCGCGCTT ATGAAAATAT TTATCAGTAC GACAACAGCT ATGGTACTCG TGACTATAAA 
GAGGCAGAAA AGGATGACCT TTCTTTTACA ATTGGTACTC AGTATCAAAG TGAACGTTGG 
GTATCTGAAT TGCAGCTAAC TACCCAGAAG CAAAAATCAT GGGATTACAC CCAGTCTAAG 
GGAAAATACT CGGACACATC GGATAATCTT GAACAACGAA ATATCCAGTG GATTAATCGC 
TATTTGGTCA ATGATGTGTG GACGTTCGCT GGTGGTGTGG ACTGGCGAGA CGAGTCGTAT 
ATTGATAAAA CAGCGGATAA AGAGTTTGAC CGCAGCAACA CTGCTGCATT TGCTGTGGTT 
GCTGCTGAGT GGCAACAATG GCTGTTGGAG GCAAGTCTAC GCTTTGATGA TAACCAAGAG 
TATGGTTCGC AAACTACCCA CAACATTGCT CTAGGGTATC AGTTTATCCC TGAGTTCGGG 
GTTAAAGCAT CTTATGGCTC AGCATTTAAG GCTCCCAATT TATATCAACA GTACGATCCG 
TCTTATGGCA ATGTTAATTT ACAACCGGAA GACGCAGATT CAGCAGAGTT GAGCTTCTAC 
GGCTTATTTT CAGGTATTAA ATGGTCTATC ACTGGCTATG ATTACAAAAT CAATAACCTG 
ATCGATTACA ACTCAACAAC GAAGAATTAC CAAAACGTAA TAGGTGAGAG CAATATAAAA 
GGAGTTGAGT TTACAGCCGA GTTTGCCACT GGAATTGTGC AGCACCAGTT AAGTGTTGAC 
CTCAAAGATG CCGATGATAG TAAAGGGAAA ACATTACAGC GTCGTGCTGA GCATATGTAT 
AAGTGGAATG CGCTAGTGGC TTTCGAACAA GTGGATTGGT CAATTGGTTA CCAATATGTA 
GGTAAACGCC CAGATTTGGA CTACAACACT TACCCCACTC AAAACATAAC ACTTGATGCG 
TATTCTCTCG TTGATACCTC AGTTAGCTAC TATGTCACAG ACTCGACGAC TATTAGCGCT 
CGAATTGATA ACTTATTAGA TAAAGAGTAC GAAACCGCCA ATGGCTACCC TGCTGCTGAG 
CGCGCGTATT ATCTTAATAT TGGTTATCAG TTTTAA 

 

Protein sequence

MQKSALAIAL ASLLTPISYL HANEAQPQET VVVTANRFEQ KASSTLADVE IITRQDIEQT 
QAKTLPELLR RLTGVQITQN GGRGQLASLF VRGTSSDQVL VLVDGIRFAR AAKGAVDFNQ 
IPLTYVDRIE YVRGARASLY GSEAIGGVIN IITKARSQQQ GTTVSAGLGS LDYQELSIAS 
GVAIGEKGQM NVALGTESDK GYNVRPVPGV NDGDRHGFRS DNALLGYVHQ FDESWSLFAN 
ARAYENIYQY DNSYGTRDYK EAEKDDLSFT IGTQYQSERW VSELQLTTQK QKSWDYTQSK 
GKYSDTSDNL EQRNIQWINR YLVNDVWTFA GGVDWRDESY IDKTADKEFD RSNTAAFAVV 
AAEWQQWLLE ASLRFDDNQE YGSQTTHNIA LGYQFIPEFG VKASYGSAFK APNLYQQYDP 
SYGNVNLQPE DADSAELSFY GLFSGIKWSI TGYDYKINNL IDYNSTTKNY QNVIGESNIK 
GVEFTAEFAT GIVQHQLSVD LKDADDSKGK TLQRRAEHMY KWNALVAFEQ VDWSIGYQYV 
GKRPDLDYNT YPTQNITLDA YSLVDTSVSY YVTDSTTISA RIDNLLDKEY ETANGYPAAE 
RAYYLNIGYQ F