| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2306 |
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| Symbol | gspD |
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| ID | 5136585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2459042 |
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| End bp | 2461066 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640533761 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001218221 |
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| Protein GI | 147674158 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATATT GGCTGAAAAA AAGTTCATGG CTGTTGGCGG GCAGTTTGCT GTCTACCCCT
CTAGCGATGG CAAACGAGTT TAGCGCCAGC TTTAAAGGCA CCGACATTCA AGAATTTATC
AATATTGTGG GACGCAATCT TGAGAAAACC ATCATTGTCG ACCCTTCGGT ACGCGGCAAA
GTCGATGTGC GCAGTTTTGA TACCTTAAAC GAAGAGCAAT ATTACAGTTT CTTCCTCAGT
GTGCTCGAAG TGTACGGTTT CGCCGTCGTT GAAATGGATA ATGGCGTACT GAAAGTCATC
AAATCGAAAG ATGCAAAGAC CTCAGCCATT CCGGTGTTGA GTGGTGAAGA GCGCGCCAAT
GGCGATGAAG TCATTACCCA AGTGGTCGCG GTGAAAAACG TTTCCGTACG CGAGTTGTCC
CCTTTGCTGC GCCAACTGAT TGATAACGCA GGGGCGGGGA ACGTAGTGCA CTACGATCCG
GCGAACATCA TTTTGATCAC GGGGCGAGCT GCGGTAGTGA ACCGTTTAGC GGAAATTATT
CGTCGCGTTG ACCAAGCCGG TGACAAAGAG ATTGAAGTGG TTGAGCTTAA TAATGCATCG
GCAGCTGAAA TGGTGCGGAT TGTTGAAGCG CTCAACAAAA CGACAGACGC GCAAAACACC
CCTGAATTCT TAAAGCCCAA GTTTGTGGCA GACGAGCGTA CCAACTCGAT TTTGATTTCT
GGCGATCCTA AAGTGCGCGA GCGCCTCAAG CGTCTGATCA AGCAGTTGGA TGTTGAGATG
GCGGCCAAAG GCAATAACCG CGTGGTGTAT TTGAAATACG CCAAAGCTGA AGATCTGGTC
GAAGTACTGA AAGGGGTGTC TGAGAACCTG CAAGCGGAAA AAGGCACCGG ACAGCCGACC
ACTTCAAAAC GTAATGAAGT GATGATTGCC GCGCACGCTG ACACCAACTC GTTAGTGCTT
ACTGCGCCGC AAGACATTAT GAATGCGATG CTGGAAGTGA TTGGACAGCT AGATATTCGC
CGTGCGCAAG TGTTGATTGA AGCGCTGATT GTCGAAATGG CAGAGGGCGA TGGGATCAAC
CTTGGTGTGC AGTGGGGCTC GCTGGAAAGT GGTTCAGTTA TCCAATATGG CAACACTGGC
GCGTCGATTG GCAATGTGAT GATTGGTCTT GAAGAAGCCA AAGACACAAC CCAAACCAAA
GCGGTTTATG ATACTAATAA CAACTTCTTG AGAAATGAAA CGACGACCAC CAAAGGGGAT
TACACCAAGT TAGCCTCTGC ATTGTCGAGC ATTCAAGGTG CTGCAGTCAG CATCGCGATG
GGCGACTGGA CGGCCTTAAT CAACGCGGTC TCTAATGATT CCAGCTCGAA TATCCTGTCA
TCACCCAGCA TTACGGTGAT GGATAACGGT GAAGCCTCCT TTATCGTGGG TGAAGAAGTG
CCGGTTATCA CAGGTTCTAC TGCAGGCTCT AATAACGACA ACCCATTCCA AACCGTGGAT
CGTAAAGAAG TCGGTATCAA GCTTAAAGTG GTGCCGCAGA TCAACGAAGG TAACTCAGTC
CAGCTCAATA TTGAGCAAGA AGTCTCGAAC GTGTTGGGCG CCAATGGAGC GGTAGACGTG
CGTTTTGCGA AGCGTCAGCT CAACACTTCT GTGATGGTGC AAGATGGGCA GATGTTGGTG
CTCGGCGGTT TGATTGATGA GCGAGCTCTT GAGAGTGAGT CGAAAGTCCC GCTCTTGGGG
GATATTCCTC TGCTGGGTCA ACTGTTCCGC TCAACCAGCT CGCAAGTGGA AAAGAAAAAC
CTGATGGTGT TTATCAAGCC GACCATTATT CGTGATGGCG TGACGGCCGA TGGCATCACC
CAACGTAAAT ACAACTACAT CCGCGCCGAG CAACTGTTCC GCGCCGAAAA AGGTTTACGT
CTGCTGGATG ATGCTAGCGT GCCTGTGTTG CCGAAATTTG GCGATGACCG CCGCCATTCA
CCTGAAATTC AAGCCTTTAT TGAGCAGATG GAAGCCAAGC AATGA
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| Protein sequence | MKYWLKKSSW LLAGSLLSTP LAMANEFSAS FKGTDIQEFI NIVGRNLEKT IIVDPSVRGK
VDVRSFDTLN EEQYYSFFLS VLEVYGFAVV EMDNGVLKVI KSKDAKTSAI PVLSGEERAN
GDEVITQVVA VKNVSVRELS PLLRQLIDNA GAGNVVHYDP ANIILITGRA AVVNRLAEII
RRVDQAGDKE IEVVELNNAS AAEMVRIVEA LNKTTDAQNT PEFLKPKFVA DERTNSILIS
GDPKVRERLK RLIKQLDVEM AAKGNNRVVY LKYAKAEDLV EVLKGVSENL QAEKGTGQPT
TSKRNEVMIA AHADTNSLVL TAPQDIMNAM LEVIGQLDIR RAQVLIEALI VEMAEGDGIN
LGVQWGSLES GSVIQYGNTG ASIGNVMIGL EEAKDTTQTK AVYDTNNNFL RNETTTTKGD
YTKLASALSS IQGAAVSIAM GDWTALINAV SNDSSSNILS SPSITVMDNG EASFIVGEEV
PVITGSTAGS NNDNPFQTVD RKEVGIKLKV VPQINEGNSV QLNIEQEVSN VLGANGAVDV
RFAKRQLNTS VMVQDGQMLV LGGLIDERAL ESESKVPLLG DIPLLGQLFR STSSQVEKKN
LMVFIKPTII RDGVTADGIT QRKYNYIRAE QLFRAEKGLR LLDDASVPVL PKFGDDRRHS
PEIQAFIEQM EAKQ
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