| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2304 |
|---|
| Symbol | epsF |
|---|
| ID | 5135876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2456314 |
|---|
| End bp | 2457534 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640533759 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_001218219 |
|---|
| Protein GI | 147675103 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCGT TTGAATACAA AGCGCTGGAT GCCAAGGGAC GCCATAAAAA AGGCGTGATT
GAGGGCGATA ATGCACGTCA GGTGCGTCAG CGCCTGAAAG AGCAAAGCCT AGTGCCGATG
GAGGTGGTGG AGACTCAAGT CAAAGCCGCG CGCAGTCGCA GCCAAGGTTT TGCGTTTAAG
CGTGGGATCA GTACGCCGGA TCTGGCGCTG ATCACTCGCC AATTGGCGAC TTTAGTTCAA
TCCGGTATGC CACTGGAAGA GTGTTTACGC GCGGTTGCCG AGCAGTCGGA AAAACCGCGG
ATTCGCACCA TGTTGGTGGC GGTGCGCGCT AAAGTGACCG AAGGTTACAC CCTCTCTGAT
AGTCTTGGCG ATTATCCGCA CGTGTTTGAT GAGCTGTTTC GTTCTATGGT TGCGGCGGGC
GAAAAATCTG GCCACCTCGA TTCCGTTCTC GAACGTTTAG CTGACTACGC CGAAAACCGC
CAGAAAATGC GCTCTAAACT GCAACAGGCC ATGATTTACC CTGTGGTGCT GGTGGTGTTT
GCGGTCGGTA TCGTGGCGTT TTTGTTGGCA GCGGTAGTGC CGAAAATCGT GGGTCAGTTT
GTGCAAATGG GGCAAGCCTT GCCGGCATCG ACTCAGTTTC TGCTTGATGC CAGCGATTTC
CTGCAACATT GGGGGATTTC GCTGCTGGTC GGTCTCTTGA TGCTGATTTA TCTGGTGCGC
TGGTTGCTGA CCAAGCCCGA TATTCGTTTG CGTTGGGATC GCCGAGTGAT TTCCTTGCCT
GTGATTGGCA AGATTGCACG CGGTCTGAAT ACTGCGCGCT TTGCGCGTAC GCTGTCGATC
TGTACCTCAA GTGCAATCCC GATTCTGGAT GGTATGCGCG TTGCGGTGGA TGTGATGACC
AATCAGTTTG TGAAACAGCA AGTGTTGGCT GCGGCCGAAA ACGTACGCGA AGGCTCTAGC
CTGCGCAAAG CGCTAGAGCA GACCAAGCTC TTTCCTCCCA TGATGCTGCA CATGATTGCC
AGTGGTGAGC AGAGTGGAGA ATTGGAAGGC ATGTTGACGC GCGCTGCGGA TAACCAAGAC
AACAGTTTTG AATCAACGGT CAACATCGCG CTTGGCATTT TTACCCCGGC CTTGATTGCC
TTGATGGCGG GGATGGTGCT GTTTATTGTG ATGGCGACCC TGATGCCGAT TTTGGAAATG
AATAACTTAA TGAGTCGTTA A
|
|---|
| Protein sequence | MAAFEYKALD AKGRHKKGVI EGDNARQVRQ RLKEQSLVPM EVVETQVKAA RSRSQGFAFK
RGISTPDLAL ITRQLATLVQ SGMPLEECLR AVAEQSEKPR IRTMLVAVRA KVTEGYTLSD
SLGDYPHVFD ELFRSMVAAG EKSGHLDSVL ERLADYAENR QKMRSKLQQA MIYPVVLVVF
AVGIVAFLLA AVVPKIVGQF VQMGQALPAS TQFLLDASDF LQHWGISLLV GLLMLIYLVR
WLLTKPDIRL RWDRRVISLP VIGKIARGLN TARFARTLSI CTSSAIPILD GMRVAVDVMT
NQFVKQQVLA AAENVREGSS LRKALEQTKL FPPMMLHMIA SGEQSGELEG MLTRAADNQD
NSFESTVNIA LGIFTPALIA LMAGMVLFIV MATLMPILEM NNLMSR
|
|---|
| |