| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2302 |
|---|
| Symbol | epsH |
|---|
| ID | 5135838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2455215 |
|---|
| End bp | 2455799 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640533757 |
|---|
| Product | general secretion pathway protein H |
|---|
| Protein accession | YP_001218217 |
|---|
| Protein GI | 147673549 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCGA CACGCGGTTT TACTTTGTTG GAAATTTTGC TGGTGCTGGT GCTGGTTTCG
GCCAGTGCGG TGGCGGTCAT CGCCACCTTT CCGGTTTCCG TCAAAGATGA AGCCAAAATC
AGTGCGCAGA GTTTTTATCA GCGTCTGTTG CTGCTCAATG AGGAAGCGAT TCTCAGCGGG
CAAGATTTTG GCGTGCGGAT CGATGTCGAT ACGCGCCGTC TCACTTTTTT GCAACTCACC
GCCGACAAAG GTTGGCAAAA GTGGCAAAAC GACAAGATGA CCAACCAAAC CACCCTTAAA
GAAGGGTTAC AGCTCGACTT TGAACTCGGT GGTGGCGCTT GGCAAAAAGA CGATCGTCTG
TTTAATCCCG GCTCTCTGTT TGATGAAGAG ATGTTTGCCG ATGAGAAAAA AGAGCAAAAA
CAGGAACCGG CTCCGCAACT GTTTGTGCTA TCGAGTGGCG AAGTGACCCC ATTTACGCTG
AGCATTTTCC CTAAAGGGCA GGAGCCCGAT GAGCAGTGGC GAGTGACCGC GCAAGAAAAT
GGCACTCTGC GTCTACTGGC TCCGGGAGAA AGTGATGAAG AGTAA
|
|---|
| Protein sequence | MTATRGFTLL EILLVLVLVS ASAVAVIATF PVSVKDEAKI SAQSFYQRLL LLNEEAILSG
QDFGVRIDVD TRRLTFLQLT ADKGWQKWQN DKMTNQTTLK EGLQLDFELG GGAWQKDDRL
FNPGSLFDEE MFADEKKEQK QEPAPQLFVL SSGEVTPFTL SIFPKGQEPD EQWRVTAQEN
GTLRLLAPGE SDEE
|
|---|
| |