Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2300 |
Symbol | epsJ |
ID | 5137418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2454220 |
End bp | 2454885 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640533755 |
Product | general secretion pathway protein J |
Protein accession | YP_001218215 |
Protein GI | 147674823 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4795] Type II secretory pathway, component PulJ |
TIGRFAM ID | [TIGR01711] general secretion pathway protein J [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 51 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGGCGAA CTAACCAAGT ATCTTCTCGC CAGAATATGG CGGGCTTTAC TTTGATTGAA GTGTTGGTGG CGATTGCGAT TTTCGCGAGC TTGAGTGTGG GCGCCTATCA GGTGCTCAAT CAAGTCCAAC GCAGCAATGA AATTTCTGCC GAGCGCACCG CGCGTTTGGC TGAATTGCAA CGCGCCATGG TGATCATGGA TGCCGATTTT CGGCAGATGG CCCTGCGCCA ATTTCGCACC GATGGCGAAG CGCCGAGTGA GCAAATCCTA CAATGGAAAG AATCGCTGCT CGATTCGGAT CAGCACGGTT TGTTGTTTGT ACGCTTGGGT TGGCATAACC CACAGCAACA ATTTCCACGC GGTGAAGTGG CGAAAGTCGG TTACCGCCTG TTTGAAAACC GCTTAGAGCG GGTCTGGTGG CGCTACCCAG ATACTCCAGC GGGGCAGCAA GGGCTGATCT CTCCGTTGTT AACTGGGGTG GAAGATTGGG CAGTACAGTT TTATTTGCAA GGTGAATGGA GTAAGGAGTG GGTGCCCACT AACGCCTTGC CTGAAGCCGT GAAAGTGACC TTGCGCCTAA AAGATTACGG TGAGATTGAG CGGATATACC TTACAGGGGG CGGTTCACTC AATATGACGC AAGAGAGTGT TGAAAATGCG GGCTAA
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Protein sequence | MWRTNQVSSR QNMAGFTLIE VLVAIAIFAS LSVGAYQVLN QVQRSNEISA ERTARLAELQ RAMVIMDADF RQMALRQFRT DGEAPSEQIL QWKESLLDSD QHGLLFVRLG WHNPQQQFPR GEVAKVGYRL FENRLERVWW RYPDTPAGQQ GLISPLLTGV EDWAVQFYLQ GEWSKEWVPT NALPEAVKVT LRLKDYGEIE RIYLTGGGSL NMTQESVENA G
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