| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2288 |
|---|
| Symbol | |
|---|
| ID | 5137602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2443907 |
|---|
| End bp | 2446228 |
|---|
| Gene Length | 2322 bp |
|---|
| Protein Length | 773 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640533744 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001218204 |
|---|
| Protein GI | 147674924 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG CTATCTGCCA CCAGATTGCT CAAGAACTGA ATGTTCGCCC TGAGCAAGTT
ATCGCTGCCG TCACCCTGAT CGACGATGGC AATACCGTTC CTTTTATCGC CCGTTACCGT
AAAGAGGTGA CGGGAGGATT GGATGATACC CAACTGCGCA ACTTAGATAG CCGTCTTGCC
TATCTGCGTG AGATGGATGA CCGTCGCCAA ACCATCCTCA AATCGATTCA AGAACAAGGC
AAACTCACCC CTGAGCTGGA GCAGGCGATT TTAAGTGCCG ACAGCAAAAA CCGCCTTGAA
GATCTCTATC TGCCTTACAA ACCGAAACGC CGCACCAAAG GCCAAATCGC GATTGAAGCG
GGTCTTGAGC CACTGGCCGA TACGCTGTGG ACGCAGCCTA ATACTGACCC TGAAAGCGAA
GCGGCAAAAT ACATTAATGC CGAGAAAGGC GTCGCCGACA GCAAAGCCGC ACTGGATGGC
GCACGCGCTA TCGTGATGGA ACGCATCGCG GAAGATGCCA ACCTACTGGA AAAAATCCGT
CAGCACCTCA ATCGCAACGC GGAAATTGTG TCGCGCGTGA TCGAGGGTAA AGAGCAAGCG
GGCGAGAAAT TTAAAGATTA CTTTGATCAC CGCGAGCCGA TCAGCAAAGC GCCTTCACAT
CGCGCGTTGG CGATGCTGCG TGGCCGTAAC GAAGGCTTCT TAACCCTAAC GCTGAATGCC
GATCCTGAAT TGGAAGAGAG TGCGCGCCAA TCCTACTGCG AAACTCTGAT TGCCGAGCAT
TACGGCATTC ATTTGAGCCA AGCGACGGCC GATGCGTGGC GCAAGCAGGT GATCAGTTGG
GCATGGAAAA TCAAAATCTC CATGCACATG GAAACCGAAC TGATGAGCGC GATGAAAGAG
CGCGCGGAAA TCGAAGCGAT TGAAGTGTTC GCCACCAACT TAAAAGATCT GCTGATGGCG
GCACCGGCGG GGCCTCGCGC GACACTGGGC CTCGATCCGG GTCTGCGCAC TGGCTGTAAA
GTCGCCGTGG TTGACGCAAC CGGTAAAGTG CTGGCAACCG ACACGATTTA CCCGCACGCA
CCACAGCATC AATACGATCG CGCCATGCAG TCTATTGCTC TGCTGGTGAA AAAGTTCAAC
GTGGATCTGA TTGCGATTGG TAACGGTACG GCGTCGCGTG AAACCGATGC TTTTGCGGCA
GATTTAATCA AGCGCGGCAA TCTCAAAGTA CAAAAAATCA TGGTCAGCGA AGCGGGCGCA
TCGGTGTATT CCGCTTCAGA GCTAGCGGCG AAAGAGTTCC CAAATCTCGA TGTGTCACTG
CGTGGCGCAG TCTCTATCGC GCGTCGTCTG CAAGACCCAC TCGCAGAATT AGTGAAGATC
GACCCGAAAT CGATAGGGGT TGGCCAGTAT CAACACGATG TGAGCCAAAC CCTGCTTGCG
AAACGTCTTG ATGCGATTGT TGAGGACTGT GTAAACGCCG TAGGTGTGGA TGTGAATACC
GCCTCGGCAG CGCTACTGAC TCGTGTTGCG GGCTTGTCTG CAGCACTCGC GCAAAACATT
GTGGATTATC GTGATGAAAA CGGTCGTTTT GAGTCGCGTA GTGCCCTCAA AAAAGTGCCG
CGTTTGGGGC CTAAAGCGTT TGAACAGTGT GCCGGCTTCC TACGCATTAT GGATGGCAAA
AACCCGCTCG ACGCTTCAGC GGTGCACCCA GAAGCGTATC CGGTGGTGAA AACTATCGCT
GAGAAGAACA GCAAAGATCT GAAAGCGCTG ATTGGCAATA CAGAGTTCCT GCGCACTCTT
CGCGCGGTCG ATTACACCGA TGAAAACTTT GGTGTACCCA CCGTGACCGA CATCATCAAG
GAGCTGGATA AACCGGGGCG TGACCCGCGT CCGGAATTCA AAACCGCGAC CTTTGCTGAA
GGCATCCATG AGGTGTCAGA TCTGGAAGTG GGCATGGTGT TGGAAGGCGT GGTCTCTAAC
GTCGCCAACT TTGGCGCGTT CGTGGATATC GGCGTCCATC AAGATGGCTT AGTGCATATT
TCTGCGCTGA CCGATCGCTT TATCTCAGAT CCGCGTGAAG TGGTTAAAGC CGGTGACATC
GTCAAAGTCA AAGTGATGGA AGTGGATGTG CAGCGTAAGC GTATCGCCCT TTCGATGCGC
TTAAACGATG AGCCGGGACA AGATAACCGC AGCCAACGCA GCGCTGCGCC ACGCTCAGGG
CAAGAGCGTC GCGCTCCACG CCGTGATGAG CCGCAAGGCA ATGCACTGGG TGGTGCCATG
GGCGGTGCGT TTGCCGCTGC TTTCGCTAAA GCGAAGAAAT AG
|
|---|
| Protein sequence | MSKAICHQIA QELNVRPEQV IAAVTLIDDG NTVPFIARYR KEVTGGLDDT QLRNLDSRLA
YLREMDDRRQ TILKSIQEQG KLTPELEQAI LSADSKNRLE DLYLPYKPKR RTKGQIAIEA
GLEPLADTLW TQPNTDPESE AAKYINAEKG VADSKAALDG ARAIVMERIA EDANLLEKIR
QHLNRNAEIV SRVIEGKEQA GEKFKDYFDH REPISKAPSH RALAMLRGRN EGFLTLTLNA
DPELEESARQ SYCETLIAEH YGIHLSQATA DAWRKQVISW AWKIKISMHM ETELMSAMKE
RAEIEAIEVF ATNLKDLLMA APAGPRATLG LDPGLRTGCK VAVVDATGKV LATDTIYPHA
PQHQYDRAMQ SIALLVKKFN VDLIAIGNGT ASRETDAFAA DLIKRGNLKV QKIMVSEAGA
SVYSASELAA KEFPNLDVSL RGAVSIARRL QDPLAELVKI DPKSIGVGQY QHDVSQTLLA
KRLDAIVEDC VNAVGVDVNT ASAALLTRVA GLSAALAQNI VDYRDENGRF ESRSALKKVP
RLGPKAFEQC AGFLRIMDGK NPLDASAVHP EAYPVVKTIA EKNSKDLKAL IGNTEFLRTL
RAVDYTDENF GVPTVTDIIK ELDKPGRDPR PEFKTATFAE GIHEVSDLEV GMVLEGVVSN
VANFGAFVDI GVHQDGLVHI SALTDRFISD PREVVKAGDI VKVKVMEVDV QRKRIALSMR
LNDEPGQDNR SQRSAAPRSG QERRAPRRDE PQGNALGGAM GGAFAAAFAK AKK
|
|---|
| |