| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2278 |
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| Symbol | |
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| ID | 5136143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2430973 |
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| End bp | 2432676 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640533734 |
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| Product | putative sodium/solute symporter |
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| Protein accession | YP_001218194 |
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| Protein GI | 147673339 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATTC AAACCTGGAC GTTTATTCTG GTCGGCATCA CTTTTGCGCT CTATATCGGT
ATTGCGATTT GGGCGCGTGC GGGATCGACC AGTGAATTCT ATGTTGCGGG CGGTGGTGTA
CACCCTGTCG CCAACGGCAT GGCTACCGCT GCCGACTGGA TGTCAGCGGC TTCCTTCATC
TCAATGGCAG GCATCATCTC TTTTATCGGC TATGACGGCA CCGTTTACCT GATGGGTTGG
ACGGGCGGTT ATGTGCTGCT TGCACTTTGC CTTGCTCCTT ACCTACGTAA ATTCGGTAAA
TTTACCGTGC CGGATTTTAT CGGAGACCGT TACTACTCCA GAACCGCGCG TATGGTTGCC
GTATTCTGTG CCATCTTTAT TTCGTTCACT TATGTGGCGG GACAAATGCG CGGTGTCGGC
GTGGTGTTTG CGCGCTTCCT TGAAGTTGAC ATCAACGTCG GTATCGTGAT CGGTATGGCG
ATCGTGTTCT TCTACGCGGT AATGGGCGGC ATGAAGGGCA TCACCTATAC CCAAGTAGCA
CAATACTGTG TACTGATCTT CGCCTTCTTG GTGCCTGCGA TCTTTACTTC ACTGATGATG
ACAGGGAACC CCATTCCACA AATTGGTTTT GGTTCAACCC TGACAGGAAC CGATGACTAT
CTCCTCAATA AGTTAGATGG CCTCGCCGTG GAACTGGGCT TTACCGCCTA TACGGATGGC
TCAAAGAGTA TGGTTGACGT CTTCTTTATC TGCGCAGCAT TGATGGTGGG TACAGCAGGT
CTACCTCACG TTATTATCCG CTTCTTCACT GTACCTAAAG TGTCAGATGC ACGTGTCTCT
GCTGGTTGGG CGTTAGTGTT TATCGCATTC TTGTACACCA CTGCACCTGC AGTAGCAGCC
TTTGCTCGCG TCAACATGAT TGACACCATC AACGGTCCAG ACATGCAAGG TGTGACGGCT
GCTGAAGCAC CGACTTGGTA TCGCAACTGG GAAAGCACGG GCCTTGTCAA ATGGGAAGAT
AAAAACGGCG ATGGACGTAT GTTCTACTCA GGCGATGCGC GTAACGAGAT GACCATCAAC
AACGACATCA TCGTTCTGGC TTCACCTGAA ATCGCCAAAC TGCCGAACTG GGTTGTGGCT
CTACTGGCAG CAGGTGGCCT TGCCGCCGCA CTCTCTACCG CAGCGGGTCT GCTACTGGTT
ATCTCAACCG CGATTTCTCA TGACTTGTTG AAGAAAGGGT TTAAACCCGA TATGACCGAT
AAGCAGGAGT TGCTCGCCGC GCGGATTGCC GCCGCACTCG CCATCGTTGG CGCGGGTTAT
CTGGGCATCA ATCCTCCGGG ATTCGTCGCT CAGGTGGTGG CCTTCGCCTT CGGTCTGGCT
GCAGCCTCCT TCTTCCCAGC GATCATCCTT GGCATCTTCT ATAAGAAGAT GAACAAAGAA
GGGGCGATCA TAGGTATGTT GGCAGGGATC ACCTTTACTG CAGCTTACAT CATCTACTTC
AAGTTCATTA ACCCAGCCGC GAGCGTTCCC GCCAACTGGT GGTTCGGTAT CAGCCCAGAG
GGCATTGGTA CACTCGGTAT GTGCTTGAAC TTTGTGGTGG CGATTGTGGT TAACAAATTC
ACCGCTGAAG TACCACAAGA TGTGCAGGAT ATGGTGGAAT CTATCCGCTA TCCAAAAGGT
GCTGGCGCGG CACACAGCCA CTAA
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| Protein sequence | MDIQTWTFIL VGITFALYIG IAIWARAGST SEFYVAGGGV HPVANGMATA ADWMSAASFI
SMAGIISFIG YDGTVYLMGW TGGYVLLALC LAPYLRKFGK FTVPDFIGDR YYSRTARMVA
VFCAIFISFT YVAGQMRGVG VVFARFLEVD INVGIVIGMA IVFFYAVMGG MKGITYTQVA
QYCVLIFAFL VPAIFTSLMM TGNPIPQIGF GSTLTGTDDY LLNKLDGLAV ELGFTAYTDG
SKSMVDVFFI CAALMVGTAG LPHVIIRFFT VPKVSDARVS AGWALVFIAF LYTTAPAVAA
FARVNMIDTI NGPDMQGVTA AEAPTWYRNW ESTGLVKWED KNGDGRMFYS GDARNEMTIN
NDIIVLASPE IAKLPNWVVA LLAAGGLAAA LSTAAGLLLV ISTAISHDLL KKGFKPDMTD
KQELLAARIA AALAIVGAGY LGINPPGFVA QVVAFAFGLA AASFFPAIIL GIFYKKMNKE
GAIIGMLAGI TFTAAYIIYF KFINPAASVP ANWWFGISPE GIGTLGMCLN FVVAIVVNKF
TAEVPQDVQD MVESIRYPKG AGAAHSH
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