Gene VC0395_A2256 details

Gene Information

• Locus tag: VC0395_A2256
• Symbol: metB
• ID: 5137708
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2404182
• End bp: 2405348
• Gene Length: 1167 bp
• Protein Length: 388 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640533712
• Product: cystathionine gamma-synthase
• Protein accession: YP_001218172
• Protein GI: 147674853
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases
• TIGRFAM ID: [TIGR02080] O-succinylhomoserine (thiol)-lyase

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCACAC GCAAGCCAGC CACCATTGCG GTTCGTACCG GTATTGAATC GGACACTCAA 
TACCATGCCG TTGTGCCCCC CATTTATCTT TCGACCAACT ATGGTTTTCC CGCGTTTGGC 
GAAGTACCTA AATACGATTA CACCCGTTCA GGCAACCCAA ACCGAGGACT TTTAGAACAA 
ACCTTATATG AGCTTGAATG TGGAGAAGGT GCCGTAGTGA CCAACTGTGG CACTTCTGCC 
ATCAATTTAT GGGTCACAGC CTTGTTAGGC CCTGATGATC TGATTGTCGC GCCGCATGAC 
TGCTATGGCG GCACTTATCG CTTGCTCAAC ACTCGCGCTA AAAAAGGCGA TTTCAAAGTG 
CAGTTTGTGG ATCAATCCAA CGCAGCCGCA CTCACCCAAG CTTTAGCCCG CAAGCCCAAA 
CTGTTGCTGA TTGAAACCCC CTCCAACCCT TTAGTGCGTG TGGTGGATAT TGCTCATCTT 
TGCCAGTTAG CGAAAGCGCA AGGCACTTTG GTGGCAGTCG ATAACACCTT CTTAACCCCG 
GTATTCCAAA AACCGCTCAC CTTAGGCGCG GATTTTGTGC TGCACTCCAC CACCAAATAC 
ATTAATGGTC ACTCGGATGT GATTGGCGGC GTGTTGATCT GTAAACACAA GCAACATGCC 
GAAGAGTTGG CTTGGTGGGG CAACTGTTTA GGGTCAACCG GCACTCCATT TGATAGCTAC 
ATGACCTTGC GTGGCATTCG CACGCTGGGC GCGCGGATGC GCGTGCATGA AGAGAGTGCG 
CAACAGATTT TGGCTTATCT GCAGACTCAA TCTTTGGTTA GCAAAATTTA TCATCCAAGT 
CTGCCCGACC ATCCGGGGCA TGAGATTGCC AAAAAACAGC AATCTGGCTT TGGCGCTATG 
CTCAGTTTCG AGTTTGCCGG CAGTTTTGAG CAGCTGAAAT TCTTTGTGGG TAAGTTGGCG 
CTGTTTTCAC TGGCGGAGTC ACTTGGCGGG GTAGAAAGTC TTATTTGCCA TCCTGCGTCT 
ATGACTCATC GTGCAATGGG CGAAGAAGCC TTAGCTGAAG CGGGAATTTC CCAGCAGTTG 
CTGCGTCTTT CCGTCGGTCT TGAAGATGCC TCTGATCTGA TTGCCGATCT TGACCAAGCC 
TTTTTGCACA CTCTTGCCGC GAATTAA 

 

Protein sequence

MTTRKPATIA VRTGIESDTQ YHAVVPPIYL STNYGFPAFG EVPKYDYTRS GNPNRGLLEQ 
TLYELECGEG AVVTNCGTSA INLWVTALLG PDDLIVAPHD CYGGTYRLLN TRAKKGDFKV 
QFVDQSNAAA LTQALARKPK LLLIETPSNP LVRVVDIAHL CQLAKAQGTL VAVDNTFLTP 
VFQKPLTLGA DFVLHSTTKY INGHSDVIGG VLICKHKQHA EELAWWGNCL GSTGTPFDSY 
MTLRGIRTLG ARMRVHEESA QQILAYLQTQ SLVSKIYHPS LPDHPGHEIA KKQQSGFGAM 
LSFEFAGSFE QLKFFVGKLA LFSLAESLGG VESLICHPAS MTHRAMGEEA LAEAGISQQL 
LRLSVGLEDA SDLIADLDQA FLHTLAAN