Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2208 |
Symbol | |
ID | 5136176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2356787 |
End bp | 2357305 |
Gene Length | 519 bp |
Protein Length | 172 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640533664 |
Product | putative fimbrial assembly protein PilP |
Protein accession | YP_001218124 |
Protein GI | 147673518 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3168] Tfp pilus assembly protein PilP |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.00448572 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATA AGCCACTTGG ATTATGGCTG ATGAGTTTGC TGGTGTTGGT CGGGTGTAAG GCGAACCAAG ATGATTTGAC CTCATACGTC GCGCAAGTTG AGCGTGAAGC GCGCAAAGAA GTAACTAAGC TCAAACCCAT TTTAGAGTTT GAAGCCACGC CCTATCAGCA GCACAAGGGG CGTGAGCCGT TTGTCTTACC GAAAGAAGCG TTAGTGCAAA ACCAACCGCT GGCCAAAGCC GACTGTTGGC AACCCGTGCC ACGTGCGAAA AATGGGCCGT TGGAGCGTTA TCCATTGCAC CAATTGCGCT TAAAAGGGGT GATGAGCAGC GGGGGCAGTA TCTCTGCCTT AGTGCAAACG CCGGCAGGGA GTGTGGTCAA GGTTAAGGCG GGTCAATATG TCGGAATCAA TAATGGCAAA GTCACCCGAG TCGACGACAA CTATTTGTTA ATTAATGAAA CTTTGCCTGA TGGCTTAGGG TGTTGGAATC AGCGTAACGT CAAGCTGGCT TTAAAATAA
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Protein sequence | MKNKPLGLWL MSLLVLVGCK ANQDDLTSYV AQVEREARKE VTKLKPILEF EATPYQQHKG REPFVLPKEA LVQNQPLAKA DCWQPVPRAK NGPLERYPLH QLRLKGVMSS GGSISALVQT PAGSVVKVKA GQYVGINNGK VTRVDDNYLL INETLPDGLG CWNQRNVKLA LK
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