| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2177 |
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| Symbol | vacB |
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| ID | 5135560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2319883 |
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| End bp | 2322348 |
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| Gene Length | 2466 bp |
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| Protein Length | 821 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640533633 |
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| Product | ribonuclease R |
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| Protein accession | YP_001218093 |
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| Protein GI | 147675348 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00000855619 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGATA CCACACATCT TGATCCTTTC GCTGATCGCG AAGCCGACAA TTATGACAAT
CCAATTCCGA GTCGTGAGTA CATTCTCGAA TTTTTAACCC AAGCCAATGT TCCCATGAAT
CGCAACGATC TGTTCGAAGC CCTCAAACTA GAAGGCGAAG AGCAATATGA AGGGTTGCGT
CGTCGCCTGC GGGCAATGGA ACGAGATGGC CAACTGGTGT TCACGCGCCG TCAATGCTAT
GCCTTGCCAG AAAAACTGGA AATGGTGAAA GGCTATGTGA TTGGCCACAA AGACGGCCAC
GGCTGGGTTC GTCCAGAAGG AAGCTTAAAC AAAGAAGGCG ATATTTTATT GCCCCACCAC
CAGATGCGTA CGCTGATCCA TGGTGATTTT GTCTTAGTGC AGCCGAGCGG TACTGATAAA
CGAGGCCGTA AAGAAGGGCG CTTAGTACGC ATTCTCGAAG AGCGCAATGG CCAAATTGTC
GGGCGTTTCT TCTTTGAATA CGGTTACTCT TATGTGGTGC CGGATGACTC ACGCATTCAT
CATGACATTC TGATCCCCAA TGACTTACGT GCCGGCGCTC GCATGGGCAA CGTGGTCGTG
ATTGAAATTA CCGACCGTGG CACGCGTAAC CGCGGCATGA TGGGTAAAGT CGTTGAAGTG
TTGGGTGAAA ACATGGCCCC GGGTATGGAA ACGCAAATTG CGATTCGTAC TCACCAAATT
CCCCATGAAT GGCCCGCAGA AGTTGAGCAG CAAGTAGCGG GATTGACCGA GGAAGTACCT
GAAGAAGCCA AGCAAGGCCG TGTCGATCTA CGTGCTTTGC CATTAGTCAC GATCGATGGC
GAAGATGCTC GAGATTTCGA TGATGCTGTC TATTGTGAAG CGAAAAAAGG CGGTGGCTGG
CGTTTATGGG TCGCGATTGC CGACGTGAGC TATTACGTAC GTCCCGATAC CGCTCTCGAT
AAAGAAGCGA TCAACCGCGG TAACTCGGTC TATTTCCCAT CGCAAGTTGT CCCAATGTTG
CCGGAAGTGC TGTCGAACGG CCTCTGTTCA CTCAACCCAC AAGTCGATCG CTTGTGCATG
GTGTGTGAAA TGACCGTATC GGAAACGGGT AAGCTCTCGG GCTACAAGCA TTACGAAGCG
GTAATGAACT CGCACGCTCG CCTGACTTAC ACCAAAGTGC ATGAAATCCT CGAAGGGGAT
GAAGAACTGC GCGAGCGTTA TAAAGCGCTG GTTCCTCATC TTGAAGAGTT GCACAAAATG
TATCAGGTGC TGAAAAGTGC ACGCGATGAG CGTGGCGCGA TTGAGTTTGA AACCGTTGAA
ACCAAATTCA TCTTCAACGC TCAGCGCAAG ATTGAAAGCA TTGAGCCTGT TGTACGTAAC
GATGCGCATA AGCTGATTGA AGAGTGTATG ATCCTCGCCA ACATCGCCTC TGCCTCTTTG
GTAGAAAAAG CCAAAGAAGC GGCGTTGTAC CGTGTCCATG AGCCACCAGG TGAAGAACGT
CTCACTGGCT TCCGTGATTT CCTCGGTGAG TTGGGGCTCG ATCTCTCCGG TGGCCTTGAG
CCATCACCGA CCGACTACGC CAATTTAATG AAGCAAATTG GTGAACGTCC AGATAAAGAG
CTGATCCAAA CCATGTTGCT GCGCTCGATG AAGCAAGCGG TGTATAACGC GGATAACGCG
GGTCACTTTG GCTTGGCGTT GAAACGTTAC GCACACTTTA CATCGCCAAT CCGTCGTTAC
CCGGATTTGT TGCTGCATCG TGCGATCAAA TATCTGATCG CGAAGCAAGA AGGGCGCAAC
CAAGACCGTT GGACTCCAAC CGGTGGCTAT CACTACTCCT TCGATGACAT GGACTTCTAC
GGTGAGCAGT GCTCCATGAC TGAGCGCCGC GCTGATGATG CGACGCGCGA AGTGTCTGAC
TGGCTCAAAT GCGAGTATAT GCAAGATCAT GTGGGTGAAG AATTAGAAGG CGTCGTCGCG
AACGTCACCA GTTTCGGCTT CTTTGTCCGT CTCACTGAGC TGCACATTGA CGGCCTGGTA
CACATTTCGA CTCTGGCTAA CGACTACTAC CACTACGATC CGATTGGTCA GCGTCTGGTG
GGGGAAAGTT TTGGTGCCAT CTATCGTCTT GGTGATGCGG TAAAAGTAAA AGTGTTGGCG
GTAAACCTTG ATGATCGCCA AATTGACTTT GAATTGGTCG AAACTAGTCG TAAGCTACGC
GGCCAAGGTA AAACCGCCAA GAAACGTGCC GATGAAGCTC GAGCCAAAGC GCAAGGTAAA
AAAGAAGCGG CCACTAAAGG TGCCCGTGGC AAATCACCAA CGAAATCAGA GTTGAAACCA
CAGGTAGAAG CGACGCGCCG TCCAGACAGT GAAGGCCGTA GCAAACCGAA AAAGACCAAA
GCGCCGAAAA AACGCAAAGA CCAAGCTCGT AAGAAAAGCG GCAAAGTACG AGATAAAACC
AAATAG
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| Protein sequence | MSDTTHLDPF ADREADNYDN PIPSREYILE FLTQANVPMN RNDLFEALKL EGEEQYEGLR
RRLRAMERDG QLVFTRRQCY ALPEKLEMVK GYVIGHKDGH GWVRPEGSLN KEGDILLPHH
QMRTLIHGDF VLVQPSGTDK RGRKEGRLVR ILEERNGQIV GRFFFEYGYS YVVPDDSRIH
HDILIPNDLR AGARMGNVVV IEITDRGTRN RGMMGKVVEV LGENMAPGME TQIAIRTHQI
PHEWPAEVEQ QVAGLTEEVP EEAKQGRVDL RALPLVTIDG EDARDFDDAV YCEAKKGGGW
RLWVAIADVS YYVRPDTALD KEAINRGNSV YFPSQVVPML PEVLSNGLCS LNPQVDRLCM
VCEMTVSETG KLSGYKHYEA VMNSHARLTY TKVHEILEGD EELRERYKAL VPHLEELHKM
YQVLKSARDE RGAIEFETVE TKFIFNAQRK IESIEPVVRN DAHKLIEECM ILANIASASL
VEKAKEAALY RVHEPPGEER LTGFRDFLGE LGLDLSGGLE PSPTDYANLM KQIGERPDKE
LIQTMLLRSM KQAVYNADNA GHFGLALKRY AHFTSPIRRY PDLLLHRAIK YLIAKQEGRN
QDRWTPTGGY HYSFDDMDFY GEQCSMTERR ADDATREVSD WLKCEYMQDH VGEELEGVVA
NVTSFGFFVR LTELHIDGLV HISTLANDYY HYDPIGQRLV GESFGAIYRL GDAVKVKVLA
VNLDDRQIDF ELVETSRKLR GQGKTAKKRA DEARAKAQGK KEAATKGARG KSPTKSELKP
QVEATRRPDS EGRSKPKKTK APKKRKDQAR KKSGKVRDKT K
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