Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2168 |
Symbol | rpsC |
ID | 5136395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2314584 |
End bp | 2315285 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640533624 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_001218084 |
Protein GI | 147673134 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000000068862 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTCAGA AAGTACATCC AAATGGTATT CGTCTAGGCA TCGTTAAGCC TTGGAATGCT ACATGGTTTG CTAACACCAA AGATTTCGCT GACAACCTAG ACGGCGACTT CAAGGTACGT CAATACCTGT CTAAGGAATT GGCAAACGCG TCTCTGTCAC GCATCGTTAT CGAACGTCCT GCGAAAAGCA TCCGTGTGAC TATTCACACT GCTCGTCCAG GTGTTGTTAT CGGTAAGAAA GGCGAAGACG TTGAAAAACT GCGTGCAGCA GTAGCAAAAA TTGCTGGCGT ACCAGCGCAA ATCAACATCG CTGAAGTACG TAAGCCTGAG CTGGATGGTC AGCTTGTGGC TGATAGCATC GCGTCTCAAC TAGAGCGTCG CGTAATGTTC CGTCGTGCTA TGAAGCGCGC AGTACAAAAC GCAATGCGCC TAGGCGCTAA AGGTATCAAA GTGGAAGTAA GCGGTCGTTT AGGCGGCGCT GAAATCGCTC GTTCAGAGTG GTATCGTGAA GGTCGCGTAC CTCTACACAC TCTGCGTGCT GACATTGATT ACGCAACTTC TTCGGCTCAC ACCACCTACG GTGTAATCGG CGTTAAAGTC TGGATCTTCA AAGGTGAGAT CCTAGGCGGT ATGCCAGCAG CAACTGAAGC TGCAGAGCCA AAGGCTGACA AGCCGAAGAA GCAGCGTAAA GGCCGTAAGT AA
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Protein sequence | MGQKVHPNGI RLGIVKPWNA TWFANTKDFA DNLDGDFKVR QYLSKELANA SLSRIVIERP AKSIRVTIHT ARPGVVIGKK GEDVEKLRAA VAKIAGVPAQ INIAEVRKPE LDGQLVADSI ASQLERRVMF RRAMKRAVQN AMRLGAKGIK VEVSGRLGGA EIARSEWYRE GRVPLHTLRA DIDYATSSAH TTYGVIGVKV WIFKGEILGG MPAATEAAEP KADKPKKQRK GRK
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