Gene VC0395_A2159 details

Gene Information

• Locus tag: VC0395_A2159
• Symbol: rplF
• ID: 5135903
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 2310996
• End bp: 2311529
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640533615
• Product: 50S ribosomal protein L6
• Protein accession: YP_001218075
• Protein GI: 147673740
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0000000000302064
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTG TTGCTAAAGC ACCTGTCGCT ATTCCAGCTG GCGTAGAGGT GAAACTGAAC 
GGCCAAGAGA TCACTATTAA AGGTGCTAAA GGCGAACTTT CTCGCGTTTT CCACAAAGGC 
GTAGTGATCG CACAAGAAGA CAACCAATTG ACTTTTGGCC CACGTGAAGG CGTAGCCAAT 
GCATGGGCAC AAGCAGGTAC TGCACGTGCT CTAGTTAAGA ACATGGTTGT TGGTGTTACT 
GAAGGCTTTA CTAAGAAACT CGTTCTAAAG GGTGTTGGTT ACCGTGCTGC TATGAAAGGC 
AACGCTGTAG GCCTGACTCT GGGTTTCTCT CACCCTGTTG AGCATGAACT GCCAGAGGGT 
ATTAAAGCTG AATGTCCAAG CCAAACTGAA ATCGTACTGA CTGGTTGTGA CAAACAACTT 
GTTGGTCAGG TTGCGGCTGA CATTCGTTCT TACCGCGCGC CTGAGCCTTA CAAAGGCAAA 
GGTATTCGTT ACGCAGATGA AAATGTGCGT AGTAAAGAAG CTAAGAAGAA GTAA 

 

Protein sequence

MSRVAKAPVA IPAGVEVKLN GQEITIKGAK GELSRVFHKG VVIAQEDNQL TFGPREGVAN 
AWAQAGTARA LVKNMVVGVT EGFTKKLVLK GVGYRAAMKG NAVGLTLGFS HPVEHELPEG 
IKAECPSQTE IVLTGCDKQL VGQVAADIRS YRAPEPYKGK GIRYADENVR SKEAKKK