| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2150 |
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| Symbol | rpsD |
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| ID | 5136044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2306422 |
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| End bp | 2307042 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640533606 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001218066 |
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| Protein GI | 147675276 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000017924 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ATTTGGGTCC TAAGCTGAAG CTTAGCCGCC GCGAAGGTAC TGACTTGTTC
CTTAAGTCAG GCGTTCGTGC GATTGATACC AAGTGTAAAA TTGATAACGC ACCAGGCGTA
CACGGCGCTC GTCGCGGTCG TCTGTCTGAG TATGGCGTTC AGCTTCGTGA GAAGCAAAAA
GTTCGTCGTA TTTATGGCGT TTTAGAAAAA CAATTCCGTA ACTACTACAA AGAAGCTGCT
CGCCTGAAAG GCAACACAGG TGAAAACCTG CTTCAGCTTC TGGAAGGTCG TCTGGATAAC
GTAGTTTACC GTATGGGTTT TGGTGCAACT CGCGCTGAAG CACGTCAGCT GGTTAGCCAC
AAAGCTATCC TAGTAAACGG TAAAGTAGTA AACGTTCCTT CTTTCAATGT TGCGGCAAAC
GACGTTGTTG CAGTTCGTGA GAAAGCGAAA AAGCAATCTC GCATCAAAGC GGCTCTAGAA
GTTGCTGAAC AACGCGAAAA ACCAACTTGG ATTGAAGTCG ATGTAAACAC GATGGAAGGT
ACTTTCAAGC GTATGCCTGA GCGTTCCGAT CTGTCTGCTG ACATCAACGA ACAATTGATC
GTCGAGCTTT ACTCTAAGTA A
|
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| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDT KCKIDNAPGV HGARRGRLSE YGVQLREKQK
VRRIYGVLEK QFRNYYKEAA RLKGNTGENL LQLLEGRLDN VVYRMGFGAT RAEARQLVSH
KAILVNGKVV NVPSFNVAAN DVVAVREKAK KQSRIKAALE VAEQREKPTW IEVDVNTMEG
TFKRMPERSD LSADINEQLI VELYSK
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