| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2149 |
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| Symbol | rpoA |
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| ID | 5136172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2305405 |
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| End bp | 2306397 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640533605 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_001218065 |
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| Protein GI | 147674278 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00000019407 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTAACAGA ATTTCTTAAG CCACGTCTTG TTGATATCGA ACAAATCAGC
ACGACACACG CAAAAGTAAC TCTTGAGCCG TTAGAGCGTG GTTTCGGCCA TACTCTGGGT
AATGCACTTC GCCGTATTCT TCTATCTTCA ATGCCAGGTT GTGCTGTGAC TGAAGTAGAG
ATTGAAGGCG TTCTTCACGA GTACAGCACC AAAGAAGGTG TTCAGGAAGA TATCCTTGAG
ATTCTCTTGA ACCTGAAAGG TCTGGCTGTT CGCGTTGCCG AAGGCAAAGA TGAAGTGTTC
ATTACACTGA ACAAATCAGG CTCGGGCCCT GTGGTTGCAG GTGACATCAC CCATGACGGT
GATGTAGAGA TCGTAAACCC TGAACACGTT ATTTGTCATT TAACTTCTGA CAATGCTGCG
ATCGCTATGC GTATCAAAGT AGAACGTGGT CGTGGTTATG TTCCAGCTTC TGCCCGTATC
CATACTGAAG AAGATGAGCG TCCAATTGGT CGTTTGCTTG TTGACGCGAC TTTCAGCCCA
GTAGACAAAA TTGCCTACTC TGTTGAAGCA GCTCGTGTTG AACAGCGTAC TGACTTGGAC
AAGCTTGTTA TCGATATGGA AACTAACGGT ACTCTTGAGC CTGAGGAAGC AATCCGTCGC
GCAGCAACAA TTCTTGCTGA GCAATTGGAT GCGTTCGTAG ATCTTCGTGA TGTACGTGTA
CCTGAGGAGA AGGAAGAGAA GCCAGAATTC GATCCGATCC TACTGCGTCC TGTAGACGAT
CTTGAACTAA CAGTTCGCTC TGCTAACTGT CTGAAAGCAG AAGCGATTCA CTACATCGGT
GATCTGGTAC AGCGCACTGA GGTTGAGCTT CTTAAAACGC CAAACCTCGG TAAGAAGTCT
CTTACAGAGA TTAAAGACGT GCTTGCATCA CGTGGTCTGT CTCTGGGCAT GCGTCTAGAA
AACTGGCCAC CAGCGTCAAT CGCTGAAGAT TAA
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| Protein sequence | MQGSVTEFLK PRLVDIEQIS TTHAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IEGVLHEYST KEGVQEDILE ILLNLKGLAV RVAEGKDEVF ITLNKSGSGP VVAGDITHDG
DVEIVNPEHV ICHLTSDNAA IAMRIKVERG RGYVPASARI HTEEDERPIG RLLVDATFSP
VDKIAYSVEA ARVEQRTDLD KLVIDMETNG TLEPEEAIRR AATILAEQLD AFVDLRDVRV
PEEKEEKPEF DPILLRPVDD LELTVRSANC LKAEAIHYIG DLVQRTEVEL LKTPNLGKKS
LTEIKDVLAS RGLSLGMRLE NWPPASIAED
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