Gene VC0395_A2141 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2141 
SymboldbpA 
ID5136941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2299293 
End bp2300675 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content51% 
IMG OID640533597 
ProductATP-dependent RNA helicase DbpA 
Protein accessionYP_001218057 
Protein GI147673597 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0253787 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAACGCCA ACTCTTTTGC TGCTTTGAAT CTGAAGCCTG AACTTCTTGC TAACCTTGAA 
ACCATGGGGT TTGCCACTAT GACTCCGATT CAGGCGCAAT CTCTTCCTGC GATCCTTAAA
GGGCAGGATG TGATTGGCCA AGGCAAAACA GGCTCCGGTA AAACCGCTGC GTTTGGTCTT
GGGGTACTCT CCAACCTCAA TGTGAAGCGC TTTCGTGTGC AAGCCTTGGT GCTGTGTCCA
ACACGTGAGT TGGCCGATCA AGTCGCGACC GATATTCGTA CGCTAGGGCG TGCTATCCAC
AATATCAAAG TGTTGACGCT GTGTGGCGGT ATGCCAATGG GGCCGCAGAT CGGATCCCTT
GAGCATGGCG CGCATATCTT GGTCGGAACG CCGGGACGGA TTTTGGATCA TTTGAGTAAA
GATCGTATCG ATCTGAGTGA GCTCAATACC TTGGTATTGG ATGAAGCTGA CCGCATGCTC
GAAATGGGTT TCCAAGAAGC GCTGGAGGCG ATCATTGCTG CCGCGCCAGC CGAGCGTCAA
ACCTTGCTGT TTAGTGCAAC TTACCCCACC AGCATTGAGC AGATTGCGCA AAGTGTGACT
CGCAATGCGC TGATGATTAA AGTTGAGGCG ACCCACGATA CTTCAAGCAT TCGTCAATAT
TTCTACAAAG TAGAAGGCAG TGCTGCGCGT GATGAGGCTC TGGAAACGTT GCTCTTGCAC
CATCAACCGA CTTCTTCGGT GGTGTTCTGT AACACCAAAC GTGAAGTACA AAATGTTGCC
GATGCCCTGC ATCAAAGCGG TTTTAGCGTG ATTGAACTGC ATGGTGATAT GGAGCAGCGT
GAGCGCGACC AAGCCTTAGT GCAATTTGCC AATAAGAGTA TTTCTATTCT GGTCGCGACC
GATGTTGCGG CTCGTGGTCT GGATGTCGAT AACCTTGATG CAGTGTTTAA CTACGATCTG
TCTCGCGATC CTGAAGTGCA TGTACATCGC ATCGGGCGTA CTGGTCGTGC GGGAAGTAAG
GGCTTAGCGT TTAGCTTCTT TAGTGACAAT GAGAGCTACC GTGTGGCGCA AATTGATGAG
TACATGGATA TCGCGATTGA ACCTTCAACC TTGCCGCAAC CAGCTGCAGG CGCTCGTCCT
TACGCGGCGA ATATGGTCAC CATTCAGATT GACGGTGGTA AGAAAGATAA GGTGCGTCCC
GGTGATATCC TTGGCGCACT GACCAGTGAT GGCGAACTGA CCGCGGAGCA TATCGGCAAG
ATTAACCTGT TCCCGATGCG TGCTTATGTG GCCGTGCAGA AGAAAATCGC CCACAAAGCT
CTGAATAAAA TTGCCAACGG TAAGATGAAG GGACGCCAGT TCCGCGCTCG CTTACTCAAA
TAA
 
Protein sequence
MNANSFAALN LKPELLANLE TMGFATMTPI QAQSLPAILK GQDVIGQGKT GSGKTAAFGL 
GVLSNLNVKR FRVQALVLCP TRELADQVAT DIRTLGRAIH NIKVLTLCGG MPMGPQIGSL
EHGAHILVGT PGRILDHLSK DRIDLSELNT LVLDEADRML EMGFQEALEA IIAAAPAERQ
TLLFSATYPT SIEQIAQSVT RNALMIKVEA THDTSSIRQY FYKVEGSAAR DEALETLLLH
HQPTSSVVFC NTKREVQNVA DALHQSGFSV IELHGDMEQR ERDQALVQFA NKSISILVAT
DVAARGLDVD NLDAVFNYDL SRDPEVHVHR IGRTGRAGSK GLAFSFFSDN ESYRVAQIDE
YMDIAIEPST LPQPAAGARP YAANMVTIQI DGGKKDKVRP GDILGALTSD GELTAEHIGK
INLFPMRAYV AVQKKIAHKA LNKIANGKMK GRQFRARLLK