| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2139 |
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| Symbol | cpdB |
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| ID | 5135255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2296557 |
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| End bp | 2298602 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640533595 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_001218055 |
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| Protein GI | 147675775 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACCTT TGTTTCATCG ACTTTTGTTA CATTTATCGA GTTGTTTTTA TTTCCTCCTT
CTGTCACTCA TTCTGGAGTC TGTGATGACC ATGATGATCA AACCTGTTTC TTTAGCGGTA
CTTGGCGGCC TGTTAGCTAT GGCGGGCCCT GTAATGGCCG ATACGATCAA ACTACGTATT
GTTGAAACCA CGGATATTCA TACCAATTTG ATGGATTATG ACTACTACAA AGATAAAGCC
TCCGATCAAA TTGGCCTGAC GCGCGCCGCC ACGCTTGTCA AACAAGCTCG CGCCGAAGTC
GAAAACAGTG TGCTGGTCGA TAACGGTGAT TTGATCCAAG GTAGCCCGAT GGGTGACTAC
ATGGCAGCGA AAGGCATCAA GGCTGGCGAA GTGCACCCCG TTTATAAAGC CATGAATCCG
CTAGGTTATG ATGTGGGTAA CATAGGTAAC CACGAATTTA ACTACGGCCT TGAGTTTTTA
AAAGAGACCA TCAACGATGC CGCCTTCCCC TACATCAACG CCAACGTGTT TGATGCCAAA
ACAGGTCAGC ACTTATTCAC GCCTTATGTG ATTAAAGAGC ACAGCTTTAA AGATACCGAT
GGAGAGGCAC ATACCATCAA GGTCGGTTAT ATCGGATTTG TTCCGCCCCA AATCATGGTG
TGGGATAAGA AAAATCTCGA AGGTAAAGTG ACCGCAGCCG ATATCAAACA GACCGCAGAA
AAACTTATCC CTGAGATGAA AGCCAAAGGC GCGGATGTGA TTGTCGCCAT CCCCCACTCT
GGGATCAGCA CCGATGAATA CCAAGCTGGC GCAGAAAACT CGGTTTACTA TCTGACCCAA
GTGAAAGGCA TTGATGCGAT TGCTTTTGGT CACTCTCACG CCGTCTTCCC GGGTAAAGAT
TTTGCTAATG TACCGGGCGC AGACATCGAT AAAGGTACCA TCAATGGCGT GACCGCTGTG
ATGCCGGGGC GTTGGGGTAG CCATGTTGGG GTGATGGATC TGACCTTAGA AAAGCAGCAA
GGTCGCTGGG CAGTGACTTC CGGTCAATCC GAAGCTCGCC CAATCTTTGA CAAAGCCAAT
AAGAAAGCGC TTGTCGAAGC CGATGCCACT ATGGTGCAAG CGCTGCAACA CGATCATCAA
GGTACACGCG ACTTTGTTAA CCAGCCAATC GGCAAAGCGA ACGACGTGAT GTACAGCTTC
TTATCACTGG TGCAAGATGA CCCAACGGTA CAAATCGTCA ACCTCGCGCA GAAAGATTAT
GTCGAGCGCT TTATTCAAGG CGATCCAAAC CTTGATGGTT TGCCAGTGCT ATCTGCCGCT
GCGCCTTTCA AAGCCGGTGG CCGTAAAGAC GATCCTAACG GTTTCACTGA AGTGGAAGCG
GGCGAGCTGA CTTTCCGTAA TGCCGCCGAC CTTTACCTGT ACCCGAACAC CTTAGTCACC
ATGAAAGTGA GCGGTCAGCA GCTTAAAGAG TGGTTAGAGT GCTCAGCAGG CCAGTTTAAC
CAGATTGATG TGACGTCTAG CGCACCGCAA TCGCTCATCA ACTGGGATGG CTTCCGCACT
TACAACTTTG ATGTGATTGA TGGCGTCAAT TACCAGATCG ATGTGACTCA GCCTGCGCGC
TACGATGGTG ACTGCAAACT GATCAACCCA AATTCACAGC GCATCGTGCA ACTGACTTAT
CAAGGTAAGC CAATTGATAC CCAACAAACC TTCTTGATCG CCACCAACAA CTATCGTGCC
TACAGCAACA AATTCCCCGG CACAGGCGCT GAGTTTGTCG CGTTTGATTC ACCCGATGAA
AACCGCACAG TAGTGGCCGA TTACATCGCT CGCGTGAGTA AGGACAAAGG CGAAGTGACG
CCAAGTGCGG ACAACAACTG GTCATTTGCT CCGATCAGCA GCAAAACCAA GCTGGATATT
CGCTTTGAAA CCTCACCAAG CGATAAAGCC ACCCAGTTTA TTAAACAAAA AGGTCAATAT
CCGATGACCC AAGTCGCCAG TGATGATGTT GGCTTCGCGG TGTATCGCAT CGACTTACAA
AAATAA
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| Protein sequence | MKPLFHRLLL HLSSCFYFLL LSLILESVMT MMIKPVSLAV LGGLLAMAGP VMADTIKLRI
VETTDIHTNL MDYDYYKDKA SDQIGLTRAA TLVKQARAEV ENSVLVDNGD LIQGSPMGDY
MAAKGIKAGE VHPVYKAMNP LGYDVGNIGN HEFNYGLEFL KETINDAAFP YINANVFDAK
TGQHLFTPYV IKEHSFKDTD GEAHTIKVGY IGFVPPQIMV WDKKNLEGKV TAADIKQTAE
KLIPEMKAKG ADVIVAIPHS GISTDEYQAG AENSVYYLTQ VKGIDAIAFG HSHAVFPGKD
FANVPGADID KGTINGVTAV MPGRWGSHVG VMDLTLEKQQ GRWAVTSGQS EARPIFDKAN
KKALVEADAT MVQALQHDHQ GTRDFVNQPI GKANDVMYSF LSLVQDDPTV QIVNLAQKDY
VERFIQGDPN LDGLPVLSAA APFKAGGRKD DPNGFTEVEA GELTFRNAAD LYLYPNTLVT
MKVSGQQLKE WLECSAGQFN QIDVTSSAPQ SLINWDGFRT YNFDVIDGVN YQIDVTQPAR
YDGDCKLINP NSQRIVQLTY QGKPIDTQQT FLIATNNYRA YSNKFPGTGA EFVAFDSPDE
NRTVVADYIA RVSKDKGEVT PSADNNWSFA PISSKTKLDI RFETSPSDKA TQFIKQKGQY
PMTQVASDDV GFAVYRIDLQ K
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