| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2115 |
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| Symbol | pmbA |
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| ID | 5137410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2270057 |
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| End bp | 2271400 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640533571 |
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| Product | peptidase PmbA |
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| Protein accession | YP_001218031 |
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| Protein GI | 147673242 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTAA AAGAGCGAGT TGCGCTGCAG CGTCAAGAGC TGGAAGCTGC GGTTGCTAAG
GCATTAGAGC TTGCAGCGGC GAGTTCGGAT GCGGCTGAAG TGGCGATCAC CAAGAGCACG
GGATTAAGTG TTTCGACCCG CATGTGTGAA GTTGAAAATG TTGAATTCAA CAGTGATGGT
GCACTTGGAA TTACTGTTTA CCGCGGTCAA CGTAAAGGCA GCGCTTCAAC ATCGGACTTG
AGTGAAAAAG CGATTCGACA AACCGTATTA GCCGCGCTGG ATATTGCTCA GTATACTTCG
GCCGATCCTT ATGCTGGCCC TGCGCCGAAA GAATTGATGG TGCAGGATAT TCCTGATCTT
GACCTCTTCC ATCCTGATGA GCCGAATCCC GATGTGGCGG CGCAAATTGC CATTGCGGCA
GAACGTGCGG CCTTAGGCTA CAGCAAGAAA ATTAAGCAAA GCGATGGCGG TAGTTATGAT
AGCCATTTCG GCATTCGTGT TTACGGCAAC AGCCACGGTG TATTGGCTAG CTATGCCTCT
AGTCGCCACA GCATTAGCTG TAGTGTGATT GGTGAAGGCC GCAACGGTGA AATGGAGCGT
GATTACAGCT ACACCGTGGC GCGTCACCGT GACGATTTAT GGACGCCAGA AAGCGTGGGT
TTGCAAGCGG CGGAAAATAC GGTGAGCCGT CTGGATCCGC AAAAGCTGAA AACGGGTCAG
TTTCCAGTGA TGTTTGCGGC AGATGTAGCG ACAGGTTTAA TCGGTCATCT GGTGATGGCG
ATCAGCGGTG GTAACTTATA TCGCAAATCG AGTTTCTTAC TCGATCATCT TGGCAAAACC
ATTCTGCCGA CGTGGTTCAA TATCAGTGAG CGCCCGCATG TGATGCGTGG TTTGGCTTCC
AGCCCATTTG ATAGTGAAGG GGTTCGTACC CAAGATCTGG AAATCATCAC TGATGGTGTG
TTGGCAACTT ACTTACTGAC CAGTTACGCC GCGCGCAAAA TGAATATGAC GCCAACCGGT
CATGCGGGTG GCATTCATAA CTGGTATGTG AAATCGACTG GTCAAAACTA CCAACAGATG
CTCAAAGAGC TGGGTACCGG CTTATTGGTG ACCGAAGTGA TGGGACAAGG TGTGAATGTG
GTGACGGGAG ATTACTCACG TGGCGCTGCT GGTTTCTGGG TAGAAAACGG TGAAATTAAA
TACCCTGTTT CTGAAATCAC CATTGCGGGT AACCTCAAGC AGATGTTGCA GCAGATTGTC
GCGGTGGGCA GTGATATCGA AACGCGCTCC CAGATCCAAA CCGGTTCTAT TTTGATTGAA
TCAATGAAGG TCGCAGGCGA GTAA
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| Protein sequence | MDVKERVALQ RQELEAAVAK ALELAAASSD AAEVAITKST GLSVSTRMCE VENVEFNSDG
ALGITVYRGQ RKGSASTSDL SEKAIRQTVL AALDIAQYTS ADPYAGPAPK ELMVQDIPDL
DLFHPDEPNP DVAAQIAIAA ERAALGYSKK IKQSDGGSYD SHFGIRVYGN SHGVLASYAS
SRHSISCSVI GEGRNGEMER DYSYTVARHR DDLWTPESVG LQAAENTVSR LDPQKLKTGQ
FPVMFAADVA TGLIGHLVMA ISGGNLYRKS SFLLDHLGKT ILPTWFNISE RPHVMRGLAS
SPFDSEGVRT QDLEIITDGV LATYLLTSYA ARKMNMTPTG HAGGIHNWYV KSTGQNYQQM
LKELGTGLLV TEVMGQGVNV VTGDYSRGAA GFWVENGEIK YPVSEITIAG NLKQMLQQIV
AVGSDIETRS QIQTGSILIE SMKVAGE
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