Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2109 |
Symbol | rpoN |
ID | 5136127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2265078 |
End bp | 2266541 |
Gene Length | 1464 bp |
Protein Length | 487 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640533565 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001218025 |
Protein GI | 147673900 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACCGT CATTACAGCT CAAGCTAGGT CAACAGTTAG CCATGACTCC GCAGCTCCAG CAGGCGATTC GTCTGTTGCA GCTTTCGACG CTGGATCTGC AGCAAGAAAT TCAGGAAGCA TTGGAATCTA ACCCCTTGTT AGAGGTGGAA GAGAACCAAG ACGAAGCGCC ATCGCTTGAT AGCGTACGTA TGACGGAAGA AAGCCCGCGC GAGCCAGAAG AACTCTACGA ACCTGAACCG CAGGATAGCT CGGATCTGAT TGAAAAATCG GAAATCAGCG CTGAATTAGA GATGGATACC ACTTGGGATG AAGTCTACAG CGCCAATACT GGCAGTACAG GACTGGCACT CGATGATGAT GCCCCTATCT ACCAAGGCGA AACCACCCAA ACCCTGCAAG ATTATCTTCA CTGGCAACTC GACTTAACTC CCTTTAGCGA TGTGGATCGC ACCATTGCCG TTGCACTTAT CGATGCTATC GACGATTACG GTTATTTAAC CGTCTCACTA GAGGAGATCC AAGAGAGCCT GCGCAGTGAT GACATTGAGT TGGATGAGAT TGAAGCGGTA CGTAAACGCA TTCAGCAGTT TGACCCCTTT GGTGTGGCAT CGCTTAATCT GCAAGACTGC TTGTTGCTGC AACTCACCAC CTATCCCTGT GATACTCCTT GGCTGGAAGA AGCGCGTTTA CTGCTCTCAC AGTACATCGA TGATTTAGGG AATCGCGATT ACAAAACCAT TCTGAAAGAG ACTAAGCTCA AAGAAGAGGA CTTGCGCGAG ATCCTGCAAC TCATCCAACA GCTCGATCCT CGCCCCGGCA GTCGAATTGC CCAAGATCAC GCTGAATACG TTATACCTGA CGTGTCAGTC TATAAAGAAC AAGGTCGATG GCTGGTCACC ATCAACCCAG ATAGTGTGCC TAAACTGAAG ATCAATCAGC AGTATGCCGA CCTGATGCGC GGTAATAATG CGGAGAGCAA CTACATCCGT ACCAATTTGC AAGAGGCAAA ATGGCTGATC AAAAGTTTAG AAAGTAGAAA CGAGACACTG CTCAAAGTTG CCAAGTGCAT AGTTGAACAC CAACACGATT TCTTCGAGTA TGGAGAAGAG GCGATGAAGC CGATGGTGCT CAACGATGTG GCGATGGCGG TGGAAATGCA TGAATCGACA ATTTCGCGTG TCACCACGCA GAAATACATG CATACCCCGC GCGGCATTTT TGAGTTGAAG TACTTTTTCT CCAGCCACGT CAGTACTGAC AATGGCGGAG AGTGCTCGTC CACTGCGATC AGGGCGCTGA TCAAAAAACT GGTGGCGGCA GAGAATCCTG CCAAACCACT CAGTGACAGC AAGATCGCAA CCCTACTCGC TGACCAAGGC ATCCAAGTCG CGCGGCGAAC CATCGCCAAA TATCGTGAAT CACTTGGCAT CGCCCCATCA AGTCAGCGCA AACGCCTGCT ATAG
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Protein sequence | MKPSLQLKLG QQLAMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPLLEVE ENQDEAPSLD SVRMTEESPR EPEELYEPEP QDSSDLIEKS EISAELEMDT TWDEVYSANT GSTGLALDDD APIYQGETTQ TLQDYLHWQL DLTPFSDVDR TIAVALIDAI DDYGYLTVSL EEIQESLRSD DIELDEIEAV RKRIQQFDPF GVASLNLQDC LLLQLTTYPC DTPWLEEARL LLSQYIDDLG NRDYKTILKE TKLKEEDLRE ILQLIQQLDP RPGSRIAQDH AEYVIPDVSV YKEQGRWLVT INPDSVPKLK INQQYADLMR GNNAESNYIR TNLQEAKWLI KSLESRNETL LKVAKCIVEH QHDFFEYGEE AMKPMVLNDV AMAVEMHEST ISRVTTQKYM HTPRGIFELK YFFSSHVSTD NGGECSSTAI RALIKKLVAA ENPAKPLSDS KIATLLADQG IQVARRTIAK YRESLGIAPS SQRKRLL
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