Gene VC0395_A2107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2107 
Symbol 
ID5136854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2263755 
End bp2264294 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content45% 
IMG OID640533563 
Producthypothetical protein 
Protein accessionYP_001218023 
Protein GI147675161 
COG category[S] Function unknown 
COG ID[COG1934] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03002] lipopolysaccharide transport periplasmic protein LptA 


Plasmid Coverage information

Num covering plasmid clones55 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCCGATCA TTCGGCTGAA CTTTATAACC AAGTACAAGG TAGATATGAA ACGCTCACAC 
CTTAGTCTTA TTGCTTGTTT GCTCGCCTCG ACTCAGGCTT ATGCACTCTC TACCGACAGA
GAACAACCAG TTTATATCGA CTCAGACAGT CAACAACTGG ATATGAAGAG CAATCGTGTC
ACCTTCTTAG GCGATGTCAA ACTCAAGCAA GGCAGCATCA ATATCAATGC CGACAAGTTG
ATCGTGATCC GTAATGCTGA AAACGGCAAA ATTGAAGAAA TCGAAGGCTA TGGCAACGTC
GCAACCTTCT CGCAACTGAC TGATGAAGGC AAAACCCTGT ATGGTGAAGC CAAAGAGCTG
TACTACAAAG TTCGCGACGA TGAGTTAGTG ATGATCAATA AAGCCATGTT GTCACAAGAT
GACAGCGAAA TTCGCGGCAG CAAAATCCGC TACAAAATCA GCTTGCAGAA ACTGATTGCC
GATAGTGATG GCAAAGGGCG CGTCTCTACC GTTCTTCAAC CACAAGCAAT CCAAGAGTAA
 
Protein sequence
MPIIRLNFIT KYKVDMKRSH LSLIACLLAS TQAYALSTDR EQPVYIDSDS QQLDMKSNRV 
TFLGDVKLKQ GSININADKL IVIRNAENGK IEEIEGYGNV ATFSQLTDEG KTLYGEAKEL
YYKVRDDELV MINKAMLSQD DSEIRGSKIR YKISLQKLIA DSDGKGRVST VLQPQAIQE