| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2088 |
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| Symbol | hepA |
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| ID | 5135189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2246656 |
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| End bp | 2249565 |
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| Gene Length | 2910 bp |
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| Protein Length | 969 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640533544 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_001218004 |
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| Protein GI | 147673548 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000725404 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATTTG CTTTAGGGCA ACGCTGGATA AGCGATACGG AAAGTGATCT CGGGTTAGGT
ACTGTGGTGG CGCTTGATGC GCGTACAGTG ACCTTGATGT TTGCAGCATC GGAAGAAAAT
CGTGTGTATG CACGTTCAGA TGCGCCGGTC ACCCGTGTGA TCTTTAATGT CGGCGATGTG
GTGGATAGTC AGCAAGGCTG GTCGTTACAA GTTGAACAAG TGGTGGAAGA CCAAGGCGTC
TACACCTATC TAGGCACCCG AGTGGATACC GAAGAAAGCG GTGTCGCGCT GCGTGAAATT
TTCCTCAGTA ACCAAATTCG TTTTAATAAA CCGCAGGACA AGTTGTTTGC CGGTCAAATC
GATCGCATGG ACAACTTCGT GCTGCGTTAT CGCGCTCTAG CCAATCAATA TCAACAGCAC
AAAAGCCCAA TGCGTGGCTT GTGTGGTATG CGCGCTGGGC TGATCCCGCA TCAGTTGTAC
ATTGCCCATG AAGTCGGTCG CCGCCATGCG CCACGCGTAT TGTTAGCCGA TGAAGTCGGT
TTGGGTAAAA CCATCGAAGC GGGCATGATC ATCCATCAGC AAGTGCTGAC CGGGCGTGCC
GAGCGCATCC TGATTGTGGT GCCTGAAACG CTGCAACACC AATGGTTGGT GGAGATGATG
CGCCGTTTCA ACCTGCACTT TTCGATTTTT GATGAAGAGC GCTGTGTGGA AGCCTTTAGC
GAGGCCGATA ACCCATTTGA AACTCAGCAG TATGTGCTGT GTTCACTCGA TTTCTTGCGT
AAAAGCCGCC AGCGTTTTGA ACAAGCCTTG GAAGCGGAAT GGGATTTATT GGTCGTCGAT
GAAGCTCACC ATCTTGAGTG GCACCCAGAA AAGCCAAGCC GCGAATATCA AGTGATTGAA
GCTCTGGCCG AACAGACTCC GGGCGTACTG CTATTGACGG CAACGCCTGA GCAGTTAGGT
CGTGAAAGCC ACTTTGCTCG TCTGCGCCTG CTGGATGCAG ATCGTTTCTA CGATTACGAA
GCCTTTGTTA AAGAAGAAGA GCAATACGCA CCCGTTGCCG ATGCCGTTAC TGCGCTGTTC
AGCGGTGAGA AGCTGAGTGA TGAAGCGAAA AACAAAATCA CTGAGCTATT GTCTGAGCAA
GATGTGGAGC CGCTGTTTAA AGCGTTGGAA AGCCACGCCA GCGAGGACGA AATTGCTTTG
GCGCGCCAAG AGCTGATCGA CAATCTGATG GATCGCCACG GTACTGGGCG TGTGTTGTTC
CGTAACACGC GTGCGGCAAT CAAAGGCTTC CCAGTGCGTA ATGTGCATTT GCTGCCATTG
GAGATCCCTT CTCAATACAC CACGTCAATG CGTGTTGCGG GCATGCTCGG CGGTAAACTG
ACGCCAGAAG CGCGCGCGAT GAAAATGCTC TACCCGGAAG AGATTTTCCA AGAGTTTGAA
GGTGACGAAT CAAGCTGGTG GCAATTTGAC TCACGCGTTA ACTGGTTGCT CGAAAAAGTC
AAAGCCAAAC GCAGCGAGAA GATCCTCGTC ATCGCTTCAC GTGCCAGCAC CGCGTTGCAG
CTAGAGCAGG CCTTGCGTGA ACGTGAAGGC ATTCGCGCAA CGGTATTTCA TGAAGGCATG
TCGATTATTG AGCGTGACAA AGCCGCTGCT TACTTTGCCC AAGAAGAGGG CGGTGCGCAG
GTGTTGATCT GTAGTGAAAT CGGCTCCGAA GGTCGTAACT TCCAGTTTGC GAACCAATTG
GTGATGTTTG ATCTGCCGTT CAACCCAGAC TTGCTGGAGC AGCGTATCGG GCGTTTGGAC
CGTATCGGCC AAAAGCGTGA TATCGATGTG TACGTGCCGT ATTTGACCGA AACGTCACAA
GCGATTTTGG CGCGTTGGTT TCAAGAAGGT TTGAATGCCT TTGCGGAAAC CTGTCCAACG
GGTCGTGCGG TGTACGATGC CTTCGCTGAG CGTTTAATCC CAATTCTGGC CGCTGGTGGC
GGTGAAGAGC TGGAAGTGAT CATCGAAGAG TCAGCCAAGC TCAACAAAAC ACTGAAATCG
CAGCTGGAAG TCGGGCGTGA TCGCTTGTTG GAAATGCATT CTAACGGTGG CGAAAAAGCG
CAGCAGATTG CCGAGCAGAT CGCGAAAACC GATGGCGATA CCAATCTGGT GACGTTTGCC
TTGAGCCTGT TTGATGCGAT TGGTCTGCAT CAGGAAGATC GTGGCGAGAA TGCTCTAGTG
GTCACTCCTG CCGAACACAT GATGGTGCCA AGCTATCCGG GCCTCCCTTA TGAAGGCGCC
ACCATTACCT TTGATCGTGA CACCGCACTG TCGCGTGAAG ATATGCACTT CATCAGTTGG
GAACACCCCA TGGTGCAAGG TGGCATTGAT TTACTGATGA GTGAAGGGGT GGGCACTTGC
GCGGTGTCGC TGTTGAAAAA CAAAGCACTG CCAGTGGGTA CTATCTTGCT GGAGCTGGTG
TATGTGGTGG ATGCCCAAGC GCCGAAACGC AGTGGCATCA GCCGCTTCTT GCCTGTCTCG
CCAATCCGAA TTCTGATGGA TGCGCGCGGT AATGATCTCT CTTCGCAAGT GGAGTTTGAA
AGCTTTAACC GTCAGCTCAG CCCAGTGAAT CGTCATTTGG CCAGCAAGCT GGTGAGTTCA
GTACAGCATG ACGTGCATCG TTTGATTACG GCAAGTGAAG CGGCGGTTGA ACCGCGAGTG
AGCGCGATTC GTGAACAAGC GCAGCGTGAT ATGCAGCAGA GCCTTAACAG CGAGTTGGAG
CGTTTGCTGG CACTCAAAGC GGTTAACCCG AACATTCGTG ATGAAGAGAT CGAAGTGCTG
GAGCAGCAAA TCAAAGAGTT GACTGGCTAT ATTGCGCAGG CGCAGTATCA GCTGGATTCA
CTGCGTTTGA TTGTGGTGGC ACACAACTGA
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| Protein sequence | MSFALGQRWI SDTESDLGLG TVVALDARTV TLMFAASEEN RVYARSDAPV TRVIFNVGDV
VDSQQGWSLQ VEQVVEDQGV YTYLGTRVDT EESGVALREI FLSNQIRFNK PQDKLFAGQI
DRMDNFVLRY RALANQYQQH KSPMRGLCGM RAGLIPHQLY IAHEVGRRHA PRVLLADEVG
LGKTIEAGMI IHQQVLTGRA ERILIVVPET LQHQWLVEMM RRFNLHFSIF DEERCVEAFS
EADNPFETQQ YVLCSLDFLR KSRQRFEQAL EAEWDLLVVD EAHHLEWHPE KPSREYQVIE
ALAEQTPGVL LLTATPEQLG RESHFARLRL LDADRFYDYE AFVKEEEQYA PVADAVTALF
SGEKLSDEAK NKITELLSEQ DVEPLFKALE SHASEDEIAL ARQELIDNLM DRHGTGRVLF
RNTRAAIKGF PVRNVHLLPL EIPSQYTTSM RVAGMLGGKL TPEARAMKML YPEEIFQEFE
GDESSWWQFD SRVNWLLEKV KAKRSEKILV IASRASTALQ LEQALREREG IRATVFHEGM
SIIERDKAAA YFAQEEGGAQ VLICSEIGSE GRNFQFANQL VMFDLPFNPD LLEQRIGRLD
RIGQKRDIDV YVPYLTETSQ AILARWFQEG LNAFAETCPT GRAVYDAFAE RLIPILAAGG
GEELEVIIEE SAKLNKTLKS QLEVGRDRLL EMHSNGGEKA QQIAEQIAKT DGDTNLVTFA
LSLFDAIGLH QEDRGENALV VTPAEHMMVP SYPGLPYEGA TITFDRDTAL SREDMHFISW
EHPMVQGGID LLMSEGVGTC AVSLLKNKAL PVGTILLELV YVVDAQAPKR SGISRFLPVS
PIRILMDARG NDLSSQVEFE SFNRQLSPVN RHLASKLVSS VQHDVHRLIT ASEAAVEPRV
SAIREQAQRD MQQSLNSELE RLLALKAVNP NIRDEEIEVL EQQIKELTGY IAQAQYQLDS
LRLIVVAHN
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