Gene VC0395_A2045 details

Gene Information

• Locus tag: VC0395_A2045
• Symbol: rpoE
• ID: 5136709
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 2202347
• End bp: 2202919
• Gene Length: 573 bp
• Protein Length: 190 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640533502
• Product: RNA polymerase sigma factor RpoE
• Protein accession: YP_001217969
• Protein GI: 147675349
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: 44
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGAGC AACTGACCGA TCAAGTGTTG ATTGAGCGAG TTCAGAATGG GGATAAGCAA 
GCATTTAACC TTTTGGTTTT GAGATATCAA AATAAAGTGT GCAACCTTAT TTCCCGGTAT 
GTAAGCAATT CCGGTGATGT GGCTGATGTA GCGCAGGAAG CGTTTATTAA AGCGTATCGA 
GCCATTCCAA CCTTTCGTGG CGAGAGTGCG TTTTACACTT GGTTGTACCG TATTGCTGTT 
AATACCGCGA AAAATCACAT TGTTGCGCAA AGCCGACGCC CACCCGCAAG TGATGTTGAT 
GCTGAAGAAG CTGAATTCTA TGAAGGTGGT GACGCATTAA AAGAATTATC GAACCCGGAG 
AACATTACGT TGTCCAAAGA GTTGAAGAAG ACTGTGTTCG ATGCAATTGA TGCGTTACCG 
GATGATTTAA AAACGGCAAT GACGTTGCGC GAGCTTGATG GCTTGAGTTA CGAGGAAATT 
GCGGAAGTGA TGGATTGCCC TGTTGGTACA GTGCGTTCAC GAATTTTCCG CGCTCGTGAG 
GCGGTAGAGA AGAAAATCAA ACCTCTTCTG TAA 

 

Protein sequence

MNEQLTDQVL IERVQNGDKQ AFNLLVLRYQ NKVCNLISRY VSNSGDVADV AQEAFIKAYR 
AIPTFRGESA FYTWLYRIAV NTAKNHIVAQ SRRPPASDVD AEEAEFYEGG DALKELSNPE 
NITLSKELKK TVFDAIDALP DDLKTAMTLR ELDGLSYEEI AEVMDCPVGT VRSRIFRARE 
AVEKKIKPLL