Gene VC0395_A2045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2045 
SymbolrpoE 
ID5136709 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2202347 
End bp2202919 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content45% 
IMG OID640533502 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_001217969 
Protein GI147675349 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAGC AACTGACCGA TCAAGTGTTG ATTGAGCGAG TTCAGAATGG GGATAAGCAA 
GCATTTAACC TTTTGGTTTT GAGATATCAA AATAAAGTGT GCAACCTTAT TTCCCGGTAT
GTAAGCAATT CCGGTGATGT GGCTGATGTA GCGCAGGAAG CGTTTATTAA AGCGTATCGA
GCCATTCCAA CCTTTCGTGG CGAGAGTGCG TTTTACACTT GGTTGTACCG TATTGCTGTT
AATACCGCGA AAAATCACAT TGTTGCGCAA AGCCGACGCC CACCCGCAAG TGATGTTGAT
GCTGAAGAAG CTGAATTCTA TGAAGGTGGT GACGCATTAA AAGAATTATC GAACCCGGAG
AACATTACGT TGTCCAAAGA GTTGAAGAAG ACTGTGTTCG ATGCAATTGA TGCGTTACCG
GATGATTTAA AAACGGCAAT GACGTTGCGC GAGCTTGATG GCTTGAGTTA CGAGGAAATT
GCGGAAGTGA TGGATTGCCC TGTTGGTACA GTGCGTTCAC GAATTTTCCG CGCTCGTGAG
GCGGTAGAGA AGAAAATCAA ACCTCTTCTG TAA
 
Protein sequence
MNEQLTDQVL IERVQNGDKQ AFNLLVLRYQ NKVCNLISRY VSNSGDVADV AQEAFIKAYR 
AIPTFRGESA FYTWLYRIAV NTAKNHIVAQ SRRPPASDVD AEEAEFYEGG DALKELSNPE
NITLSKELKK TVFDAIDALP DDLKTAMTLR ELDGLSYEEI AEVMDCPVGT VRSRIFRARE
AVEKKIKPLL