Gene VC0395_A2043 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2043 
SymbolrseB 
ID5135571 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2200748 
End bp2201698 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content50% 
IMG OID640533500 
Productperiplasmic negative regulator of sigmaE 
Protein accessionYP_001217967 
Protein GI147674099 
COG category[T] Signal transduction mechanisms 
COG ID[COG3026] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAC TTTTGATCAG TGCGCTGACA CTGTTCTGTG TAAATTCAAC TACCGCCTTT 
GCAGAGGCGT TGTTGTATCA GATGAATGAA GCCAGCCAAC ATCTCAATTA CGAACTCTCA
TACATCTTGG TTAAGAAAAA CAGCATTGAG CCCTTGTTGT ATCGTCATGC TCGGCAAGAT
GATCAACAAC TGGCGCATTT GGTGTACTTG AGCGGCCCCG TGCGTGAAGT GATCCGCCGT
GGTGATGAAG TGAGTTACAT CGAGCCGGGT GTCGAGCCTT TTACGATTGA ATCGGGCAAT
ATGGTGGCTC CAACCATCCC CATGTTGCAC ACGGATGTGG CGGAGTTGAG CCGCTACTAT
GACTTCGTGA AAGTCGGGCG CGCCCGTGAA GCGGGGGCAG CGTGCCAAGT ACTGCGCGTG
GTTCCGAAAG ATGGTTTACG CTACTCGTAT GTTGTCTGGG TCGATGAAAA AAGCCATTTG
CCTTTAAGGG CGGATTTGCT GGATCGCGAT GGCGAAGTGC TTGAGCAGTA TCGCACCATT
TCATTTTCGG TCAGCGAGCG TTTGGCCGAA ATCATGGCAG GGCTAAACAA GGTGCAACTG
CCTGAAGTCC TTAAGTTGCC AAAAGGCAGT GTGCAAGAGA CCTTCTGGCA AGTCACTTGG
GTTCCGGATG GTTTTCAAGC CATGGAGCTG AATCGTTATC GTATGGCAAT GACAGAGCGT
TTGGTGGAAA GCCAGATGTA TTCGGACGGC CTGTTTAATT TCTCAGTGTA TGTCTCTGCC
AGTGATAACT ACTCACTCAA AGGTCAGTTG GTTCGACAAG GCCGCCGTAC TTTGCACAGT
GTCGTCAAAG GTGAGAATGA AATTTCGGTA GTGGGCGATA TTCCTCCTGC GACTGCGCAA
CGTATCGCTC AATCGGTGAT GTTTGGTGTC GGTGGAGTGA AAGCGCAATG A
 
Protein sequence
MKKLLISALT LFCVNSTTAF AEALLYQMNE ASQHLNYELS YILVKKNSIE PLLYRHARQD 
DQQLAHLVYL SGPVREVIRR GDEVSYIEPG VEPFTIESGN MVAPTIPMLH TDVAELSRYY
DFVKVGRARE AGAACQVLRV VPKDGLRYSY VVWVDEKSHL PLRADLLDRD GEVLEQYRTI
SFSVSERLAE IMAGLNKVQL PEVLKLPKGS VQETFWQVTW VPDGFQAMEL NRYRMAMTER
LVESQMYSDG LFNFSVYVSA SDNYSLKGQL VRQGRRTLHS VVKGENEISV VGDIPPATAQ
RIAQSVMFGV GGVKAQ