| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2010 |
|---|
| Symbol | cpdA |
|---|
| ID | 5135497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2161579 |
|---|
| End bp | 2162397 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640533467 |
|---|
| Product | cyclic 3',5'-adenosine monophosphate phosphodiesterase |
|---|
| Protein accession | YP_001217934 |
|---|
| Protein GI | 147675382 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1409] Predicted phosphohydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000000000440565 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAGTGT CGTCTCAATC AGAGGATTCA TCGATCAAGC TTATTCAGAT CACGGACACC
CATTTGTTCG CGGCGGAAGA TGGTAGCTTG CTCAGTGTGA ATACGGCTGA CAGCTTTGCG
GCTGTGGTTG CGGCCATTGG TGAAGAGCAG GTCGAATTTG ATGCTATTCT CGCCACCGGG
GATATTTCAC AAGACCACAC ACCCGAGTCT TATCAACGCT TTGTGCGCGG TATTCAGCCG
CTAAAAAAAG CGTGTTATTG GCTGCCCGGT AATCATGATT ACAAACCGAG TATGCACGGT
GTACTGCCCA CTCAGCAAAT TCAAGCCGTT GAACATGTGC TGCTGGGGGA GCATTGGCAA
GTGGTGTTAC TCGATTCGCA AGTGGTTGGC GTGCCGCACG GCAAACTGAG TGAGCAGCAG
TTACAACTGC TGGATAACAA GCTGACCGAG TACCCAGAGC GTCACACTTT AGTGCTGCTG
CACCATCATC CGCTCTTGGT GGGAAGCGCT TGGCTTGATC AGCACACACT CAAAGAGAGC
GAGCGTTTTT GGGATGTCGT CGCCAAGCAC AGTAATGTGA AAGCCATTTT GTGTGGGCAT
GTGCATCAGG ATATGGATCG TATTCACCTT GGCGCGCGTG TGATGGCGAC CCCCTCAACC
TGTGTGCAGT TTAAGCCTAA TTCACAAGAT TTCGCGTTAG ATAACTGCTC ACCCGGCTGG
CGTGAATTAA CCCTTCACGC GGATGGGCAA GTGAGCACCC AAGTGAAGCG ACTTAAACAA
GGCCGATTTT TACCTGATTT TAACTCGAAC GGATACTGA
|
|---|
| Protein sequence | MKVSSQSEDS SIKLIQITDT HLFAAEDGSL LSVNTADSFA AVVAAIGEEQ VEFDAILATG
DISQDHTPES YQRFVRGIQP LKKACYWLPG NHDYKPSMHG VLPTQQIQAV EHVLLGEHWQ
VVLLDSQVVG VPHGKLSEQQ LQLLDNKLTE YPERHTLVLL HHHPLLVGSA WLDQHTLKES
ERFWDVVAKH SNVKAILCGH VHQDMDRIHL GARVMATPST CVQFKPNSQD FALDNCSPGW
RELTLHADGQ VSTQVKRLKQ GRFLPDFNSN GY
|
|---|
| |