Gene VC0395_A2008 details

Gene Information

• Locus tag: VC0395_A2008
• Symbol: parE
• ID: 5137422
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 2158781
• End bp: 2160661
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 640533465
• Product: DNA topoisomerase IV subunit B
• Protein accession: YP_001217932
• Protein GI: 147674220
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000000000820641
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGAAC AATATAATGC TGGGGCCATT GAGGTTCTCA ATGGCTTAGA ACCAGTGCGT 
CGCAGACCGG GAATGTATAC CGACACCACG CGCCCCAATC ACCTTGGGCA AGAAGTGATC 
GACAACTCCG TCGATGAAGC GCTGGCCGGA TACGCCTCCA AAATTCAGGT AATTCTTCAT 
GCCGATCAAT CGCTCGAAGT GATTGATGAC GGGCGAGGCA TGCCCGTCGA TATTCACCCC 
GAAGAGAAGG TCTCAGGGGT GGAGCTTATC CTGTGCAAAC TGCACGCCGG TGGTAAGTTT 
TCCAACAAAA ACTACCAATT TTCCGGTGGC TTGCATGGGG TGGGTATTTC GGTGGTGAAT 
GCGCTCTCCA AACGGGTAGA AGTGGCGGTT CGCCGTGATG GTCAAGTGTA TGAAATTGCC 
TTTGAACATG GCGATAAAGT GACTGAGCTG ACGGTTACGG GGACTTGCGG CCGTCGCAAT 
ACCGGTACTA GCGTCCATTT CTGGCCAGAC ACCAAATATT TTGACTCACC GAATTTCTCC 
GTATCGCGCC TGATTAATAA CTTGCGTGCC AAGGCGGTAC TTTGCCCCGG TTTAGAAATC 
ATCTTTACCG ATAAGGTCAA TAACAACGAG CACCGCTGGT TGTACGAAGA TGGTCTAAAA 
GATTATCTGG CCGAAGGGGT GAAAGGTTAT ACCTTACTGC CGGAAGAGCC GTTTACCGGC 
GAATTTACTG CGCAAACCGA AGCGGCAACG TGGGCGGTGA TTTGGCTACC CGAAGGTGGC 
GAGCTCATCA CCGAAAGCTA CGTTAACCTG ATCCCAACTG CGCAAGGTGG TACCCATGTC 
AACGGTTTAC GCCAAGGCTT GCTGGATGCG ATGCGCGAGT TTTGTGAGTT CCGCAATCTG 
CTGCCACGCG GGGTAAAATT GACAGGCGAG GACGTGTTTG ACCGCTGTGC TTATGTGCTG 
TCGATCAAGA TGCAAGATCC GCAGTTTGCT GGCCAAACCA AAGAGCGCCT ATCTTCACGC 
CAATCGGCGG CGTTTGTCTC CGGTGTGGTG AAAGATGCCT TTAGCTTGTG GCTTAACGAA 
AAACCACAAC TGGCAGAGCA GTTAGCCGAA GTTTGTATTG CTAATGCGCA CAGCCGAATG 
CGTGCCAGCA AGAAAGTGGT ACGTAAGAAG ATCGCTTCAG GCCCTGCCTT ACCGGGTAAA 
TTAACCGACT GTACAGTGCA AGACCTTAAC CGCACCGAAC TCTTCCTGGT GGAAGGGGAT 
TCGGCGGGCG GCTCGGCGAA GCAAGCGCGG GATCGTGAAT TCCAAGCGGT GATGCCACTG 
CGCGGCAAAA TCCTCAATAC ATGGGAAGTT TCTGCCGATC AAGTATTGGC TTCACAAGAA 
GTACACGACA TCTCAGTTGC ATTGGGGATT GACCCTGACA GCGATAACCT CGAAGCACTG 
CGTTACGGCA AGGTCTGTAT CCTTGCCGAT GCGGACTCGG ATGGTCTGCA CATTGCGACC 
TTGCTTTGCG CCCTATTTAC CCGCCATTTC CGCGCGCTGG TGAAAGCGGG TCACGTCTAT 
GTTGCCATGC CGCCGCTCTA CCGCATCGAC TGTGGTAAAG AGGTGTTCTA CGCACTCGAT 
GATCAAGAAA AAGAGGGCGT GTTAGAGCGT CTGAGCCAGA AAAAAGCCAA AGTGAACGTG 
CAACGCTTTA AAGGCTTGGG TGAAATGAAC CCGCTGCAAT TGCGTGAAAC CACCATGGAT 
CCCAACACTC GCCGCTTGGT GCAACTGACC ATTGATGATG CTGAAGCGAC CGACGAGATG 
ATGGATATGC TGCTGGGTAA AAAGCGTGCG GATGACCGCC GAGCTTGGCT GCAACGTAAC 
GGCGATATGG CAGAGGTGTA A 

 

Protein sequence

MTEQYNAGAI EVLNGLEPVR RRPGMYTDTT RPNHLGQEVI DNSVDEALAG YASKIQVILH 
ADQSLEVIDD GRGMPVDIHP EEKVSGVELI LCKLHAGGKF SNKNYQFSGG LHGVGISVVN 
ALSKRVEVAV RRDGQVYEIA FEHGDKVTEL TVTGTCGRRN TGTSVHFWPD TKYFDSPNFS 
VSRLINNLRA KAVLCPGLEI IFTDKVNNNE HRWLYEDGLK DYLAEGVKGY TLLPEEPFTG 
EFTAQTEAAT WAVIWLPEGG ELITESYVNL IPTAQGGTHV NGLRQGLLDA MREFCEFRNL 
LPRGVKLTGE DVFDRCAYVL SIKMQDPQFA GQTKERLSSR QSAAFVSGVV KDAFSLWLNE 
KPQLAEQLAE VCIANAHSRM RASKKVVRKK IASGPALPGK LTDCTVQDLN RTELFLVEGD 
SAGGSAKQAR DREFQAVMPL RGKILNTWEV SADQVLASQE VHDISVALGI DPDSDNLEAL 
RYGKVCILAD ADSDGLHIAT LLCALFTRHF RALVKAGHVY VAMPPLYRID CGKEVFYALD 
DQEKEGVLER LSQKKAKVNV QRFKGLGEMN PLQLRETTMD PNTRRLVQLT IDDAEATDEM 
MDMLLGKKRA DDRRAWLQRN GDMAEV