| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2001 |
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| Symbol | pilC |
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| ID | 5137670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2152568 |
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| End bp | 2153794 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640533458 |
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| Product | type IV pilin biogenesis protein PilC |
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| Protein accession | YP_001217925 |
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| Protein GI | 147673666 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.148255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCGA CCCAAACCTT ACCTCTGAAA AATTATCGCT GGAAAGGCAT CAACAGCAAC
GGCAAAAAAG TTTCCGGCCA GATGCTCGCC ATCTCCGAAA TCGAGGTGCG CGATAAGCTC
AAAGATCAGC ATATTCAGAT CAAAAAACTC AAAAAAGGCA GTGTATCTCT TTTGGCACGC
CTAACCCATC GCGTGAAAAG TAAAGATATT ACGATTTTGA CTCGGCAGTT GGCGACCATG
CTCACCACGG GCGTACCCAT TGTGCAAGCC CTCAAGTTGG TGGGCGATAA TCACCGTAAA
GCTGAGATGA AATCGATTCT GGCGCAAATC ACCAAAAGCG TGGAAGCGGG CACGCCACTT
TCCAAGGCGA TGCGCACCGC CAGCGCCCAT TTTGATACCT TGTATGTCGA TTTAGTGGAA
ACCGGAGAGA TGTCCGGTAA CTTACCTGAG GTGTTTGAGC GTTTGGCCAC CTACCGCGAG
AAAAGCGAGC AACTACGCGC CAAGGTGATT AAAGCGCTCA TCTACCCCAG CATGGTTGTG
TTGGTCGCGC TCGGGGTATC TTACTTAATG CTCACCATGG TCATCCCAGA GTTTGAAAGC
ATGTTTAAAG GCTTTGGTGC TGAACTGCCT TGGTTTACGC AGCAAGTGCT GAAACTCTCA
CACTGGGTGC AGGCTTACAG TTTATGGGCA TTTATCGCCA TCGCAGCAGC CATTTTTGGC
TTGAAAGCGC TGCGTAAAAA CTCTTTCCAG ATCCGTTTAA AAACCAGCCG CTTAGGGCTG
AAATTTCCGA TTATTGGTAA TGTGCTCGCT AAGGCTTCCA TCGCCAAATT CAGCCGTACC
CTCGCCACCA GCTTTGCCGC GGGGATCCCA ATTCTCGCCA GTTTAAAAAC CACGGCCAAA
ACCTCCGGCA ATGTGCACTT TGAAACCGCG ATTAATGAGG TGTACCGCGA TACCGCTGCG
GGTATGCCGA TGTACATTGC TATGCGCAAT ACCGAAGCTT TTCCCGAAAT GGTGCTGCAA
ATGGTGATGA TCGGTGAAGA GTCTGGGCAA TTAGACGACA TGCTCAACAA GGTCGCGACC
ATCTATGAAT TTGAAGTCGA TAACACGGTC GATAACTTGG GCAAGATTCT TGAACCACTG
ATCATCGTCT TTCTTGGGAC GGTTGTGGGC GGCTTAGTGG TGGCGATGTA CTTACCTATC
TTTAACTTAA TGAGTGTATT GGGTTAG
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| Protein sequence | MKATQTLPLK NYRWKGINSN GKKVSGQMLA ISEIEVRDKL KDQHIQIKKL KKGSVSLLAR
LTHRVKSKDI TILTRQLATM LTTGVPIVQA LKLVGDNHRK AEMKSILAQI TKSVEAGTPL
SKAMRTASAH FDTLYVDLVE TGEMSGNLPE VFERLATYRE KSEQLRAKVI KALIYPSMVV
LVALGVSYLM LTMVIPEFES MFKGFGAELP WFTQQVLKLS HWVQAYSLWA FIAIAAAIFG
LKALRKNSFQ IRLKTSRLGL KFPIIGNVLA KASIAKFSRT LATSFAAGIP ILASLKTTAK
TSGNVHFETA INEVYRDTAA GMPMYIAMRN TEAFPEMVLQ MVMIGEESGQ LDDMLNKVAT
IYEFEVDNTV DNLGKILEPL IIVFLGTVVG GLVVAMYLPI FNLMSVLG
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