Gene VC0395_A1992 details

Gene Information

• Locus tag: VC0395_A1992
• ID: 5136455
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2142097
• End bp: 2144001
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640533449
• Product: putative 2`,3`-cyclic-nucleotide 2`-phosphodiesterase
• Protein accession: YP_001217916
• Protein GI: 147673840
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA CAATCTTAAC CAGCGCTATC GCGCTCTCCT TTGCTTTTCC GGCCTTGGCC 
GCCAATGGAG ATATCCATAA TGTCACCATT TTGGGTACTT CAGATCTGCA CGGCCATTTC 
ATGCCTTGGG ATTACTCTGC GGATAAACTC AATCTAAGTG GCAGCTTGAG CCAAATTGCC 
ACCAAGGTGA AAACCATCCG CCAAGAGCAA CCTAACGTAA TTTTGGTTGA TGCGGGCGAC 
ACCATTCAGG GCAACTTTGT TGAAACCTTC AAAGATGAAG CGATTGATCC GATGATGCTG 
GGCTTCAACG AAATGAAGTA CGACGTTTGG GTTCTCGGTA ATCATGAGTT CGACTTTGGT 
CTCAAAGTTC TTAATCGATC CTTAACTCAA TTTAAAGGGC GCTCTCTGGC GGGTAACATC 
CAACGTCCTG ATGGTAATCC TTTCCTACCC GGTTACACCA TTATTGAACG TGGTGGCATC 
AAGATTGGGG TGATCGGTAT GGATACTCCA ATGACCCAAG TGTTTGCTGA AGGGACAAAT 
CGGCTCGAAG GCATGACCTT CACTAACCCA ACTCTCGAAG TGCAAAAGAT CATCAAACAA 
ATTGATCCGC AGGTAGATGC GATTGTATTA GTGGCACACA TGGGGATTGA GAATGAAAAC 
GACATCACCA ATACCGGTGT TACTGACATA GCTAACGGCA ACCCTGAGCT CGATGCGATT 
GTAGCAGGTC ACATGCATAC GCTGATTGAT AAAGCCGTGG TAAATGGCGT GATCATCACC 
GAGCCTGACA AATACGGCCG TGCGCTATCG CGTATCGACC TGCAATTTGA AGAGCAAAAT 
GGCAAGTTCA CTCTCATCAA TAAAGATAGT CTGACCTACA AAATCAAAGA CATTACCTCT 
GACAGCAGAA TGGAGTCGCT CTACGAGCCT TACCATAAAC GCTTACGTGA AATGGCGAAC 
CGCGAAATTG CCCAACTGAG TGGGGTGAAC TTGGTGCCAG AAAACGAAAT TCGTGGCATC 
CCACAAGTGC ATGTGCAAGA CACAGGCATC AGTGCTCTAT TCCAAGAAGC CAGCTTTTTC 
TATGCGCCCA AAGCCAATGT GATTGCGCTG CAAATTGATA ACGACAATGC CAAGTTAGAC 
GTTGGCTCGA TCAAAGCCAA AGACATCGCC TACAACTACC AATATGCTGG CGGTGAAATT 
ACGGTTTACC AAATGACAGG CAAAGAGTTG AAACAATATA TGGAATGGTC GGCAGGCTAC 
TTCAACTCCG TCAAGCCCGG TGACGTCACT TACAGCTTTA ACCCTGAACG TCGTGCATCA 
AAATACTCCA CTAACGATTT TTTTGCGGGA GTCACTTACA CCATCGATCT GACTCAGCCA 
GCAGGTGAAC GTATTACCGA CTTAAAATTT GCAGATGGCA CACCAGTAAA GGACAACAGT 
GAAATTCGTC TAGGCATGAA TAGCTACCGT ATGGGGCATC TCACTAAGAA AGGCGGCGTA 
CTGGAAGGAC AACAATTCCC AGTGCTGTTT GACACTGAAG CCGAATACGG TGAAGAACAA 
GGCACGATTC GCAACCTCAC CATTCGATAC CTCACCGAGC AAAAGCAAGG TAAGTATGAA 
GGTAAACCGA TGCAACGCTG GAAACTGTCT GGTTTAGAAG GATTTGAGAA GGAACGGGAG 
ATCGTTAAAG AGCTGATTAA TAGTGGAAAA ATGGATGTCC CTGCCAGCGC TGATGGCCGT 
TACACCAATA TTGAATCAAT TAATGTCCAA GACCTGATTT TGAAAAACTC AGAAGCGAAA 
AACGCGGCGA TTACGCAGCG CCTATCGCGC CTAGAAAGTG CGCCAGAGAA TGAAAAAACC 
ACGCTAAAAC GTGAACTGAT TTTGTTGGAA GCACTTAATC CTTAA 

 

Protein sequence

MKKTILTSAI ALSFAFPALA ANGDIHNVTI LGTSDLHGHF MPWDYSADKL NLSGSLSQIA 
TKVKTIRQEQ PNVILVDAGD TIQGNFVETF KDEAIDPMML GFNEMKYDVW VLGNHEFDFG 
LKVLNRSLTQ FKGRSLAGNI QRPDGNPFLP GYTIIERGGI KIGVIGMDTP MTQVFAEGTN 
RLEGMTFTNP TLEVQKIIKQ IDPQVDAIVL VAHMGIENEN DITNTGVTDI ANGNPELDAI 
VAGHMHTLID KAVVNGVIIT EPDKYGRALS RIDLQFEEQN GKFTLINKDS LTYKIKDITS 
DSRMESLYEP YHKRLREMAN REIAQLSGVN LVPENEIRGI PQVHVQDTGI SALFQEASFF 
YAPKANVIAL QIDNDNAKLD VGSIKAKDIA YNYQYAGGEI TVYQMTGKEL KQYMEWSAGY 
FNSVKPGDVT YSFNPERRAS KYSTNDFFAG VTYTIDLTQP AGERITDLKF ADGTPVKDNS 
EIRLGMNSYR MGHLTKKGGV LEGQQFPVLF DTEAEYGEEQ GTIRNLTIRY LTEQKQGKYE 
GKPMQRWKLS GLEGFEKERE IVKELINSGK MDVPASADGR YTNIESINVQ DLILKNSEAK 
NAAITQRLSR LESAPENEKT TLKRELILLE ALNP