| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1972 |
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| Symbol | secA |
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| ID | 5135827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2113622 |
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| End bp | 2116333 |
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| Gene Length | 2712 bp |
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| Protein Length | 903 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640533429 |
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| Product | preprotein translocase subunit SecA |
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| Protein accession | YP_001217896 |
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| Protein GI | 147673246 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000194313 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAACTA AGCTACTGAC AAAGGTGATT GGCAGTCGCA ATGACCGCAC ACTGCGCCGT
TTACGCAAGA TTGTAAAAGA GATTAATAAC TACGAACCCG CCTTTGAAGC CCTCTCCGAT
GAAGAGCTAA AAGCGAAAAC TGTCGAGTTC CGTCAACGCA TTGAACAGGG CGAAAACCTT
GATCAACTGT TGCCAGAAGC TTTTGCCACC GTGCGCGAAG CTTCTAAGCG TGTGTTCGGC
ATGCGCCATT TTGATGTACA GCTGATTGGC GGTATGGTGC TGCATGGCGG TCAAATCGCT
GAGATGCGTA CGGGTGAAGG TAAAACGCTA ACCGCAACGC TGGCTGCTTA CCTGAATGCC
CTACCTGGCA AAGGCGTACA CATTGTTACG GTCAACGACT ACTTGGCCAA ACGTGACGCA
GAAACCAACC GACCACTCTT CGAATTCTTA GGCATGACCG TGGGTGTGAA TATTCCCAAC
ATGCCGCAGC CTGCTAAAAA AGAGGCTTAC CAAGCCGACA TCCTGTACGG CACCAACAAC
GAATTTGGTT TTGACTACCT GCGCGATAAC ATGGCGTTTC GCCCTGAAGA TCGCGTGCAA
CGTGCTCGCT TCTTTGCTGT GGTCGATGAA GTGGACTCAA TCTTAATCGA TGAAGCACGT
ACCCCGCTGA TTATCTCAGG TCCTGCGGAA GACAGTTCGG ATCTCTACAT CCGTATCAAC
AAGTTGATCC CGCTACTGCA AAAGCAAGAT AAAGAAGATT CGGAAGAGTA CCGCGGTGAC
GGTCACTTCA CCGTGGATGA AAAATCTAAG CAGGTGCATC TGACCGAAAC GGGTCAAGAG
TTCGTTGAAG AGCTGCTAGT GAAAAACGGC ATGATGCAAG AGGGTGATAC GCTTTACTCT
CCCGCTAACA TTAGCTTGCT GCACCACGTT AACGCGGCAT TACGTGCGCA TGTTCTGTTT
GAAAAGAACG TCGATTACAT CGTGACACCC GATGGTGAAG TGGTGATCGT TGATGAACAT
ACCGGTCGTA CTATGCCGGG TCGTCGCTGG TCTGATGGTC TGCACCAAGC GGTAGAAGCA
AAAGAAGGGG TGAAGATCCA GAACGAAAAC CAAACTCTGG CTTCGATCAC TTTCCAAAAC
TACTTCCGTC TGTATGAAAA GCTGTCTGGT ATGACGGGTA CCGCTGATAC CGAAGCGTTT
GAATTCCAAC AAATTTATGG TTTGGAAACA GTTGTTATTC CAACCAACAA GCCGATGGTG
CGTAACGATA TGCCGGATGT GGTGTATCGC TCTGAGGCGG AAAAGTTTGC CGCGATCATT
GAAGATATCA AACAGCGTGT TGAGAAAGGT CAACCTGTGT TGGTGGGTAC GGTTTCGATT
GAGAAATCAG AATTGCTCTC CAATGCACTG AAAAAAGCAG GCATCAAGCA CAATGTTCTG
AACGCGAAGT TCCATGAAAA AGAAGCGGAA ATTGTTGCTG AAGCCGGTAA ACCTGGCGCA
GTCACCATCG CAACTAACAT GGCGGGTCGT GGTACGGATA TCGTATTGGG TGGCAGCTGG
CAAGCCAAAG TGGAGAAGCT GGACAACCCA ACCCAAGAGC AAATTGATGC GATTAAAGCT
GAGTGGAAGC AAGTGCACGA TCAAGTGTTG CAAGCGGGCG GCCTACACAT CATTGGTACT
GAGCGTCACG AATCTCGCCG TATCGATAAC CAGCTACGTG GTCGTTCTGG TCGTCAAGGT
GATGCGGGTT CATCGCGTTT CTATCTCTCA ATGGAAGATA CTTTACTGCG TATTTTCACC
TCTGATCGTA TGGCGGCATT GATCCAAAGC GGTATGGATG AAGGCGAAGC GATTGAGTCA
AAAATGCTCT CTCGCTCGAT TGAAAAAGCG CAGCGTAAAG TAGAAGGCCG TAACTTCGAC
ATTCGTAAAC AGTTGCTGGA ATACGATGAC GTAGCGAACG ATCAGCGTAA AGTCGTTTAC
GAACTGCGTG ATGAACTGAT GAGCGCAGAT GACATCAGCG ACATGATCGC GCAAAACCGT
GAAGATGTGC TGAACGCGGT GATGGATGAG TACATTCCGC CACAATCTCT GGAAGATATG
TGGGATATCA AAGGGTTGGA AGATCGCCTA AAGAACGATT TCGATCTACC ACTACCGATC
CAATCTTGGT TAGATGCTGA CAACAAGCTG TATGAAGAAG CGCTACGTGA GCGCATCATC
GAGCAAGCGG TTGAGGTTTA TAAAGCCAAA GAGCAAGCGG TTAGCCCTGC GGTGATGCGT
AACTTTGAAA AATCTGTGAT GCTGCAAACG CTAGATACAC TGTGGAAAGA GCATCTGGCG
GCGATGGATC ACTTGCGTCA AGGTATTCAT CTACGTGGTT ACGCACAGAA AAACCCGAAA
CAAGAGTACA AGCGCGAGTC GTTTGAACTG TTTGAAGATC TGCTTGAGTC ACTCAAATCG
GATGTGATCA CTGTCTTGTC CAAAGTCCGT GTTCAGCAGC AAGAAGAAGT GGAGCGTATG
GAAGCTCAAC GCCGCGCGCA AGCTGAAGAA GCGGCGCGTC ATGCACAAGC GCAACACGCG
AGTGCTGATG ATGCTGAGCA AGACGAGTCG AACCAGCCAA TGGTGCGTGA TGAACGCAAA
GTGGGCCGTA ACGAACCTTG TCCATGCGGT AGCGGTAAAA AATACAAACA GTGTCACGGG
CAAATTAACT AA
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| Protein sequence | MITKLLTKVI GSRNDRTLRR LRKIVKEINN YEPAFEALSD EELKAKTVEF RQRIEQGENL
DQLLPEAFAT VREASKRVFG MRHFDVQLIG GMVLHGGQIA EMRTGEGKTL TATLAAYLNA
LPGKGVHIVT VNDYLAKRDA ETNRPLFEFL GMTVGVNIPN MPQPAKKEAY QADILYGTNN
EFGFDYLRDN MAFRPEDRVQ RARFFAVVDE VDSILIDEAR TPLIISGPAE DSSDLYIRIN
KLIPLLQKQD KEDSEEYRGD GHFTVDEKSK QVHLTETGQE FVEELLVKNG MMQEGDTLYS
PANISLLHHV NAALRAHVLF EKNVDYIVTP DGEVVIVDEH TGRTMPGRRW SDGLHQAVEA
KEGVKIQNEN QTLASITFQN YFRLYEKLSG MTGTADTEAF EFQQIYGLET VVIPTNKPMV
RNDMPDVVYR SEAEKFAAII EDIKQRVEKG QPVLVGTVSI EKSELLSNAL KKAGIKHNVL
NAKFHEKEAE IVAEAGKPGA VTIATNMAGR GTDIVLGGSW QAKVEKLDNP TQEQIDAIKA
EWKQVHDQVL QAGGLHIIGT ERHESRRIDN QLRGRSGRQG DAGSSRFYLS MEDTLLRIFT
SDRMAALIQS GMDEGEAIES KMLSRSIEKA QRKVEGRNFD IRKQLLEYDD VANDQRKVVY
ELRDELMSAD DISDMIAQNR EDVLNAVMDE YIPPQSLEDM WDIKGLEDRL KNDFDLPLPI
QSWLDADNKL YEEALRERII EQAVEVYKAK EQAVSPAVMR NFEKSVMLQT LDTLWKEHLA
AMDHLRQGIH LRGYAQKNPK QEYKRESFEL FEDLLESLKS DVITVLSKVR VQQQEEVERM
EAQRRAQAEE AARHAQAQHA SADDAEQDES NQPMVRDERK VGRNEPCPCG SGKKYKQCHG
QIN
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