Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1949 |
Symbol | |
ID | 5137025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2081021 |
End bp | 2082760 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640533406 |
Product | sensory box/GGDEF family protein |
Protein accession | YP_001217873 |
Protein GI | 147673373 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.773832 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGAAT TTCTCTCTGA ATTTGTACGT TTCTTGTTCG CTGCCGGGCT TGTGCTTGGT GGTGGGTTAT GGCTTTTTTC AGGATGGCAG CGCTATGTTC AACCTCAACA GTGGATTCAG TTACTTCACC ATGCACCGTC AGGGATGCTC TTGGTAGGAG AGGATCGCGT TTTACGTGCC AATCTTGCCG CGTATTTGTT ACTGGGGATC CGCTTGGTGG GACGTCACTA TCTGTTTTCT GCCGAGCAGA GTGAAGAGAG TCAGCAAGCT TTTTATCGAG CGCTCGCCAG CAGTGCACAG CAAAAGCGTT CCGTCCCTCT GCTTTGGCCT GTGCCGGGCA ATTTGACCCA AACTCTAGAG ATCTCAGCTT CGCTCTTACG TCGTTGGCCG AAGAAATTAT GGCTAGTGAA TGTGATTGGT TTTGAGTGTC CCAGCCATGA CATTCAACAA GAGCGCCACT CACTGGCGAT AGCGCGCACG GCACTTGATT CCCTCTCCGA GCTGATTTTT ATTAAAAGTA CCGAAGGCCA CTTAATCGCA ACCAACCGAG CGTTTGATCA GTTTTGGCAA GGCCGGATTG AAGAGGGCAG CGCTACTTTT AAAGGCATTA TGAAAGGGCG CACGAGTCAG CGTTGCTGGA CTGTGACGCC TGATGGGCGC AGCTGTCTGT TAGAAACCTA CCAACGGGTA TTGATGTCGC CGCAAGGTGA AAATATTGGG CTACTTGGCA TCAGTCATGA TGTGACCGAC TGGTACAACA TGCAGCGTCA ATTAAGAGAA GAGATGGAAA AACGCCGTGA CACCGAAGTG GCATTGGCAC AGCGCGATAC GATTTTACAA AACATCTTAG AATCTAGCCC CGATTCGATT GGTATCTTCA ATGAAAACAT GGTCTACCAA GCCTGTAACC AGCCGTTTGT GGAAGCTCTC GGGATCGCGG AAGTGTCAGA TCTGGTTGGT AAACGGCTGC AAGATGTGAT CCCCGAGCAC ATCTATGCGC GTCTTTCCGA TACGGATAGC CAAGTCCTGC ACCAAGGTAA GTCTCTGCGC TACATCGACA GAATTGAACG CTCAGATGGT GAGTTTATCT GGTTTGATGT TGTGAAATCG CCTTTTCGAG ATCCGGCTTC GGGCACCAAT GGCGTGCTGA TCATGGCGCG AGATGTGTCG GAGCGCTATC TCGCCGCTGA ACAATTAGAA GCCGCCAACC AAGAGCTGGA ACGCCTAAGC TTTTTAGATA GCTTGACTCA TGTTGCCAAT CGTCGTCGTT TTGATGAACA ACTGCATACC CTCTGGCATT TGCATGTGCG TGAAGGCAAA CCATTAAGCA TCATTCTGTG TGATGTCGAT TATTTCAAAG ATTACAACGA CGCTTATGGC CATTTGATGG GCGATGAGAC GCTCAAACAG ATAGCGATTG CCTTTACTCA AGTCGCCAAT CGCCATTCTG ATTGTGTTGC CCGCTACGGG GGAGAAGAGT TTGGTATTTT GCTGCCCAAT ACACCACAGT CCGGAGCAAT ACTGGTCGCA GAGCGAATCC ATGAGAAAGT TCGTGGATTA GCGATTCCAC ATGATCATTC TAAGGTTGCC GATAGGATTA CCGTCAGCTT AGGCATAGTG ACGCTTATTC CTCGGCCTGA GGATGTACCT GAGCAAATGG TTGAGCTAGC GGATCGGGCT TTATACCAAG CCAAAGCGAA TGGCCGCAAT CAGACCTCAA TTTATCAACC AAACCACTAA
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Protein sequence | MPEFLSEFVR FLFAAGLVLG GGLWLFSGWQ RYVQPQQWIQ LLHHAPSGML LVGEDRVLRA NLAAYLLLGI RLVGRHYLFS AEQSEESQQA FYRALASSAQ QKRSVPLLWP VPGNLTQTLE ISASLLRRWP KKLWLVNVIG FECPSHDIQQ ERHSLAIART ALDSLSELIF IKSTEGHLIA TNRAFDQFWQ GRIEEGSATF KGIMKGRTSQ RCWTVTPDGR SCLLETYQRV LMSPQGENIG LLGISHDVTD WYNMQRQLRE EMEKRRDTEV ALAQRDTILQ NILESSPDSI GIFNENMVYQ ACNQPFVEAL GIAEVSDLVG KRLQDVIPEH IYARLSDTDS QVLHQGKSLR YIDRIERSDG EFIWFDVVKS PFRDPASGTN GVLIMARDVS ERYLAAEQLE AANQELERLS FLDSLTHVAN RRRFDEQLHT LWHLHVREGK PLSIILCDVD YFKDYNDAYG HLMGDETLKQ IAIAFTQVAN RHSDCVARYG GEEFGILLPN TPQSGAILVA ERIHEKVRGL AIPHDHSKVA DRITVSLGIV TLIPRPEDVP EQMVELADRA LYQAKANGRN QTSIYQPNH
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