| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1890 |
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| Symbol | |
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| ID | 5136828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2008917 |
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| End bp | 2009597 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640533347 |
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| Product | putative transcriptional activator |
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| Protein accession | YP_001217814 |
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| Protein GI | 147675664 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3806] Anti-sigma factor |
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| TIGRFAM ID | [TIGR02451] anti-sigma factor, putative, ChrR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTATC ACCCTAATTA TGCTTTACTC GCAGCCTATG CTGAGGGCGG TCTTGATTCT
GCGCATGGTT TGGCGATTTC TGCTCATTTG GAAATCTGCC CACATTGTCG TGACTTGGTG
CATGAGATTG AGGCAGAACT TGGTGAGTTA CTCAATCAGC AAGCGGCCTC TTCTGTCGCC
TTGTCAGACG ATGCCAACTG GCAAGCGATG TTCGATTCGA TTGTGGCCTT GCCGCAGCAA
GCGGCATCGA ACACTCCCGT TAAAACCACA CCGGTAATGG TGACGGTAAA CGGTAAGCAG
ATTGCGATTC CCAAAGTCTT AGCGCGTTTG GTTAAACCTG AGCAGCAGTG GCGCAGCTAC
GGTGGCAAAG TGTTCAGTTT ACCTTTGCAG TCGGAAGATA ATGTACGGAT GAATCTGATG
TACATCAGCC AAGGGGTTTC TATTCCTCAG CACACCCATA AAGGGTTTGA GTCGACCTTG
GTGTTGCACG GTGGTTTTAG TGATGAAAAT GGTCATTACG ATGTGGGTGA TTTTATGCAG
CATGATGGTC AAATCTGCCA TTCGCCAAGC ACACCGCAAG ATCAAGACTG CCTTTGCTTA
ACCGTATTGA CTGAGCCTAT GGTCTTTACC CAAGGGGTAG CGCGGATCTT TAACCTGTTT
GGCAAGGGAC TTTACCCGTA A
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| Protein sequence | MSYHPNYALL AAYAEGGLDS AHGLAISAHL EICPHCRDLV HEIEAELGEL LNQQAASSVA
LSDDANWQAM FDSIVALPQQ AASNTPVKTT PVMVTVNGKQ IAIPKVLARL VKPEQQWRSY
GGKVFSLPLQ SEDNVRMNLM YISQGVSIPQ HTHKGFESTL VLHGGFSDEN GHYDVGDFMQ
HDGQICHSPS TPQDQDCLCL TVLTEPMVFT QGVARIFNLF GKGLYP
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