Gene VC0395_A1887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1887 
Symbol 
ID5136837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp2006211 
End bp2006831 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content46% 
IMG OID640533344 
Productputative lipoprotein 
Protein accessionYP_001217811 
Protein GI147673359 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3056] Uncharacterized lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value0.998777 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGCCTTG CGGCTGTGTG CACAATAAAA CGAAAGGAAT TAACCATGAA AAAACTGGTT 
CTTGCGGCTT CAATCGCTTT ACTTACCGCT TGTTCTGCTC CTCAGCAGAG TCAAATCAAC 
GTTAACCCTC AAGCGGCATT AAGCCAAAAT GCGATTGTGA ATAACAGCAG CTTTTCGCTG 
GTCAGCAAAG ATGTGCGTTC AGCGCAATAT GTGGCTTTAG TCGATAGTGG TCGTAACAAT 
ATTGAGCCCA TTCATCCACG CCAAAATGTG CGCATTACGC TAGAAAACGC CCTGGCTGAA 
CAGTTTGGAT CGCAAGGTTT CCGTCTCAGC GTCAATAGTG AAAACACCAT CACTCTCGAA 
ATCCAAGAAC TTTTGGTCTC CGTGAAGCAC TCAATCATGG AAAACCAAAT GGATGGCAGC 
GTGGTATTGG AAATCACGGC TGAAACACCA AGAGGCAAGT TGGTGAAAAG CTACACAGGC 
ACCGCAAAAC GTACTGGCGT TCTCAGTGCC TCTAACGATG AAATTGAAAC CGTACTCAAT 
GACGTGATCA ACACTGTGCT CAAAGAGATC GCTAACGATG CCGAGCTGCA AAACTACATG 
CAGGAGCGCT TTAATGGCTA A
 
Protein sequence
MSLAAVCTIK RKELTMKKLV LAASIALLTA CSAPQQSQIN VNPQAALSQN AIVNNSSFSL 
VSKDVRSAQY VALVDSGRNN IEPIHPRQNV RITLENALAE QFGSQGFRLS VNSENTITLE 
IQELLVSVKH SIMENQMDGS VVLEITAETP RGKLVKSYTG TAKRTGVLSA SNDEIETVLN 
DVINTVLKEI ANDAELQNYM QERFNG