| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1883 |
|---|
| Symbol | nqrB |
|---|
| ID | 5135939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2001521 |
|---|
| End bp | 2002768 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640533340 |
|---|
| Product | Na(+)-translocating NADH-quinone reductase subunit B |
|---|
| Protein accession | YP_001217807 |
|---|
| Protein GI | 147674588 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1805] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB |
|---|
| TIGRFAM ID | [TIGR01937] NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00000172224 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCTTA AAAAGTTTCT TGAAGACATC GAGCATCATT TTGAGCCAGG CGGCAAACAC
GAGAAGTGGT TTGCCCTGTA TGAAGCAGCG GCGACGCTGT TCTATACACC AGGTCTGGTA
ACCAAAAGAA GCTCGCACGT TCGTGATAGC GTTGACCTAA AACGTATCAT GATCATGGTT
TGGCTTGCCG TATTCCCAGC GATGTTCTGG GGTATGTACA ACGCTGGCGG CCAAGCTATT
GCAGCACTTA ACCATCTGTA TTCAGGTGAT CAACTCGCGG CGATTGTGGC GGGTAACTGG
CACTACTGGC TAACCGAAAT GCTTGGCGGA ACCATGTCAA GCGATGCTGG TTGGGGCAGT
AAAATGCTGT TGGGTGCAAC CTACTTCCTA CCTATCTACG CTACGGTGTT CATCGTCGGT
GGTTTCTGGG AAGTGTTGTT CTGTATGGTG CGCAAGCATG AAGTCAACGA AGGTTTCTTC
GTTACCTCTA TTCTGTTTGC TCTGATTGTT CCGCCAACTC TGCCTCTGTG GCAAGCTGCA
CTGGGTATTA CCTTTGGTGT TGTGGTTGCC AAAGAAGTGT TTGGTGGTAC AGGCCGTAAC
TTCCTTAACC CAGCGCTGGC TGGCCGTGCT TTCCTGTTCT TTGCTTACCC AGCACAGATC
TCAGGTGACC TAGTATGGAC TGCGGCAGAT GGCTACTCAG GCGCAACTGC GCTGAGCCAA
TGGGCACAAG GTGGTGCAGG TGCACTGATT AACAACGCGA CTGGTCAAAC GATCACTTGG
ATGGATGCTT TCATCGGTAA CATCCCAGGT TCAATTGGTG AAGTGTCTAC TCTGGCACTC
ATGATTGGTG CAGCGTTCAT TGTTTATATG GGCATTGCTT CATGGCGCAT TATTGGCGGC
GTGATGATTG GTATGATCCT GCTGTCGACA CTGTTTAACG TGATTGGCTC AGATACCAAC
GCAATGTTCA ACATGCCTTG GCATTGGCAC CTAGTATTGG GTGGTTTCGC ATTCGGTATG
TTCTTCATGG CGACTGACCC AGTTTCTGCG TCCTTCACCA ATAGCGGTAA ATGGGCTTAC
GGTATTCTGA TCGGTGTTAT GTGTGTGCTG ATCCGTGTTG TGAACCCGGC TTACCCAGAA
GGCATGATGC TGGCGATCCT ATTCGCGAAC CTATTTGCGC CACTGTTTGA CCATGTGGTT
GTAGAGAGAA ATATCAAGCG GAGATTAGCG CGCTATGGCA AGCAATAA
|
|---|
| Protein sequence | MGLKKFLEDI EHHFEPGGKH EKWFALYEAA ATLFYTPGLV TKRSSHVRDS VDLKRIMIMV
WLAVFPAMFW GMYNAGGQAI AALNHLYSGD QLAAIVAGNW HYWLTEMLGG TMSSDAGWGS
KMLLGATYFL PIYATVFIVG GFWEVLFCMV RKHEVNEGFF VTSILFALIV PPTLPLWQAA
LGITFGVVVA KEVFGGTGRN FLNPALAGRA FLFFAYPAQI SGDLVWTAAD GYSGATALSQ
WAQGGAGALI NNATGQTITW MDAFIGNIPG SIGEVSTLAL MIGAAFIVYM GIASWRIIGG
VMIGMILLST LFNVIGSDTN AMFNMPWHWH LVLGGFAFGM FFMATDPVSA SFTNSGKWAY
GILIGVMCVL IRVVNPAYPE GMMLAILFAN LFAPLFDHVV VERNIKRRLA RYGKQ
|
|---|
| |