| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1881 |
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| Symbol | nqrD |
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| ID | 5137734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2000129 |
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| End bp | 2000761 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640533338 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit D |
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| Protein accession | YP_001217805 |
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| Protein GI | 147673905 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1347] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD |
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| TIGRFAM ID | [TIGR01939] NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00240188 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTAGCG CAAAAGAGCT GAAAAAGAGT GTGTTAGCCC CAGTTTTGGA CAACAACCCG
ATTGCACTGC AAGTTCTGGG TGTGTGTTCT GCACTGGCGG TAACCACTAA GCTGGAAACG
GCATTTGTTA TGACGCTAGC GGTAATGTTT GTTACTGCAT TGTCTAACTT CTTCGTTTCT
CTGATCCGTA ACCACATTCC TAACAGTGTG CGTATTATCG TACAAATGGC GATTATCGCT
TCGTTAGTTA TCGTGGTAGA CCAGATTCTG AAAGCGTATC TGTACGATAT TTCTAAGCAA
CTGTCGGTAT TCGTTGGTCT GATTATCACC AACTGTATCG TAATGGGTCG TGCAGAAGCG
TTTGCAATGA AGTCTGAACC AATTCCTTCT TTCATTGATG GTATTGGTAA CGGTTTAGGA
TACGGTTTCG TGCTGATGAC GGTTGGTTTC TTCCGTGAGC TTTTAGGCTC AGGTAAGCTA
TTTGGCTTGG AAGTTCTGCC TCTGATCAGC AACGGTGGTT GGTATCAGCC AAACGGCCTG
ATGCTACTCG CACCTTCAGC ATTCTTCCTG ATCGGCTTCA TGATTTGGGC GATTCGCACG
TTCAAACCAG AACAAGTAGA AGCGAAGGAG TAA
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| Protein sequence | MSSAKELKKS VLAPVLDNNP IALQVLGVCS ALAVTTKLET AFVMTLAVMF VTALSNFFVS
LIRNHIPNSV RIIVQMAIIA SLVIVVDQIL KAYLYDISKQ LSVFVGLIIT NCIVMGRAEA
FAMKSEPIPS FIDGIGNGLG YGFVLMTVGF FRELLGSGKL FGLEVLPLIS NGGWYQPNGL
MLLAPSAFFL IGFMIWAIRT FKPEQVEAKE
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