| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1871 |
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| Symbol | rimK |
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| ID | 5136753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1989543 |
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| End bp | 1990448 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640533328 |
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| Product | ribosomal protein S6 modification protein |
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| Protein accession | YP_001217795 |
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| Protein GI | 147675637 |
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| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) |
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| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAATTG GTATTCTGTC GCGTAACGCT TCGCTGTATT CGACCAAGCG TTTGATAGAA
GCGTGCAAAC AGCGTGGCCA TGAAGTTCGA GTGATTGATG CCTTGCGCTG CTACATGAAT
ATCAACTCTG ACAAACCAGA GATTCATTAC AAAGGCGAAG AGCTAGCCGG TTTTGATGCT
GTGATTCCTC GTATCGGTGC TTCTGTCACT TTCTACGGTA CCGCTGTACT GCGCCAGTTT
GAAATGATGG GCGTTTACCC AGCCAATGAA TCCGTTGCGA TTACTCGCTC TCGTGACAAG
CTGCGCTCCA TGCAGTTGCT CTCTCGTCGC GGCATTGGCA TGCCCATCAC CGGTTTTGCG
AGTAAGCCTG ATGATGTCAA AGACTTGCTC GATATGGTCG GCGGCGCGCC AGTAGTGATT
AAGCTATTAG AAGGCACACA AGGCATCGGC GTGGTATTGG CAGAAACCCG TACTGCGGCG
GAAAGTGTTA TTGAAGCGTT CATGGGACTC AAAGCCAATA TCATGGTGCA AGAGTACATC
AAAGAAGCAG GCGGTGCGGA TATTCGCTGC TTTGTGATTG GTGATAAAGT GATTGCAGCG
ATGAAGCGCC AAGGCGCAGA TGGTGAGTTT CGCTCGAACC TGCATCGTGG TGGTACGGCA
TCATTGGTCA AAATCACCCC TCAAGAGCGT AAAACGGCGA TTGAAGCGGC CAAAATTATG
GGATTGAATG TAGCGGGTGT AGATCTGCTG CGTTCTGCCC GCGGCCCACT GGTGATGGAA
GTGAACTCCT CACCGGGTTT AGAAGGCATT GAAGCCGCGA CGGGGAAAGA CATTGCGGGT
ATGATCGTCG AATTCATAGA GAAAAATGCA GCCAGTAAAA GGACTAAAAC TCGTGGCAAA
GGCTAA
|
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| Protein sequence | MKIGILSRNA SLYSTKRLIE ACKQRGHEVR VIDALRCYMN INSDKPEIHY KGEELAGFDA
VIPRIGASVT FYGTAVLRQF EMMGVYPANE SVAITRSRDK LRSMQLLSRR GIGMPITGFA
SKPDDVKDLL DMVGGAPVVI KLLEGTQGIG VVLAETRTAA ESVIEAFMGL KANIMVQEYI
KEAGGADIRC FVIGDKVIAA MKRQGADGEF RSNLHRGGTA SLVKITPQER KTAIEAAKIM
GLNVAGVDLL RSARGPLVME VNSSPGLEGI EAATGKDIAG MIVEFIEKNA ASKRTKTRGK
G
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