| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1861 |
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| Symbol | ribD |
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| ID | 5136263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1978664 |
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| End bp | 1979767 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640533318 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001217785 |
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| Protein GI | 147673692 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00806124 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCTATGT TTACCTCTTT TGATCATCAA ATGATGTCTC GCGCGATTGA ACTTGCGTGG
CGCGGGCATT TTACCACTTC TCCTAATCCT AATGTCGGCT GCGTGATCAC TCGCGGTGAG
CAGATTGTAG GGGAAGGTTT CCATTTTCGC GCGGGGGAAC CCCATGCTGA AGTGCATGCT
ATGCGCCAAG CCGGTGAGCT TACCCGCGGT GCGACCGCTT ATGTCACTTT AGAACCTTGC
TCTCATTATG GTCGCACACC GCCTTGTGCT GAAGGGCTTA TTAAAGCCGG GGTTGCGAAA
GTGATTTGCG CAATGCAAGA CCCTAACCCA CAAGTGGCGG GGAAGGGCGT ACAAATGCTG
CGTGATGCCG GGATTGAGGT TGAAGTGGGG TTGCTGGAAG CGGATGCTCG AGTACTCAAC
CGCGGTTTTC TAAAACGTAT GGAAACCGGC ATGCCTTTTG TGCAGCTTAA AATGGCGGCG
AGTCTCGATG GACAAACCGC GCTCGCTAAC GGTAAAAGCC AGTGGATTAC CTCTCCTGCA
GCACGTAAAG ATGTTCAGCG GTTTCGCGCG CAAGCCAGTG CGATTCTCTC CACCAGTCAA
ACGGTGCTGG CGGATAATGC TTCTCTGGCG GTGCGTTGGT ACGATTTACC GTCATCGGTA
CAGGCGCAAT ACGCAGAAGC GGATTTGCGT CAGCCACTGC GGGTGATTTT GGATCGTCAA
CATCAATTGC ATCCAGAGTT AGCGTTATAC CAAACACCTT CACCCGTGCT GCGAGTTGCC
AGCGAGAATG CCGAACTCTG TATCTCTGCT GAGAACGGAA AGCTTGATTT GCGTGAGCTT
TTGGCACTAC TCGCTCAGCA ACACAATGTG AATCAACTCT GGGTAGAGGC GGGGAGCCAA
CTGGCTCAAT CTTTGATTGA GCAAAAGTTG GTGGATGAAA TCATTCTCTA TTTAGCGCCG
AAACTGATGG GCAGTGATGG CCGTGGTTTA TTTGGCGCGC TCGGTTTGAC GGAAATGGCT
GAGGCCATTG AACTCAAAAT AGAAGATTGT CGAATGGTGG GGGCAGATTT GCGGATCATC
GCCACCCCAA AAACAAAAGA TTAG
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| Protein sequence | MPMFTSFDHQ MMSRAIELAW RGHFTTSPNP NVGCVITRGE QIVGEGFHFR AGEPHAEVHA
MRQAGELTRG ATAYVTLEPC SHYGRTPPCA EGLIKAGVAK VICAMQDPNP QVAGKGVQML
RDAGIEVEVG LLEADARVLN RGFLKRMETG MPFVQLKMAA SLDGQTALAN GKSQWITSPA
ARKDVQRFRA QASAILSTSQ TVLADNASLA VRWYDLPSSV QAQYAEADLR QPLRVILDRQ
HQLHPELALY QTPSPVLRVA SENAELCISA ENGKLDLREL LALLAQQHNV NQLWVEAGSQ
LAQSLIEQKL VDEIILYLAP KLMGSDGRGL FGALGLTEMA EAIELKIEDC RMVGADLRII
ATPKTKD
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