Gene VC0395_A1860 details

Gene Information

• Locus tag: VC0395_A1860
• Symbol: ribE
• ID: 5137238
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1978006
• End bp: 1978659
• Gene Length: 654 bp
• Protein Length: 217 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640533317
• Product: riboflavin synthase subunit alpha
• Protein accession: YP_001217784
• Protein GI: 147673055
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0307] Riboflavin synthase alpha chain
• TIGRFAM ID: [TIGR00187] riboflavin synthase, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.0164931
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTACAG GTATTGTTGA AGCGGTTGGC AAGCTGACCG CTATTATCCC TAAAGGCAGC 
GACGTCACCA TCAGTGTAGA TGTGGGTAAG CTGGACATGG GCGATGTTAA ACTCGGTGAC 
AGTATTGCCA CTAATGGCGT CTGCTTAACG GTTGTGGCAT TTGATCAGCG TAGTTTTAGC 
GCGGATCTGT CGATGGAAAC CCTCAAAAAA TCGGGCTTTG CACAGTATCA GGTTGGTGAT 
CGCGTTAACC TTGAAAAAGC CATGCTGCCC ACGACCCGTT TTGGTGGTCA TATCGTCTCA 
GGGCATGTGG ATGGCGTAGG TGAAATCGTC GAGCGTATTC CTGTGGGGCG TGCGGTGGAT 
CTGTGGGTCA ATATGCCGGC AGAAATCAGC AAATACGTGG CTGAAAAAGG CTCGATTACC 
GTTGATGGCA TCAGTTTAAC GGTCAATGAT CTGCGTAAAA ACGCGTTTAA ACTGACCATA 
GTGCCCCACA CCAGCGCAGA AACCACTATC GATGAATTCC AAGTGGGACG CCGAGTCAAT 
CTGGAAGTGG ATGTATTGGC ACGTTACATG GAGCGTTTAC TGCAAGGTCA ACAAGAGAGT 
GAACCTCAAT CGCGTCTGAC CATGGCATTT TTGCAACAAA ACGGTTTTGC TTAA 

 

Protein sequence

MFTGIVEAVG KLTAIIPKGS DVTISVDVGK LDMGDVKLGD SIATNGVCLT VVAFDQRSFS 
ADLSMETLKK SGFAQYQVGD RVNLEKAMLP TTRFGGHIVS GHVDGVGEIV ERIPVGRAVD 
LWVNMPAEIS KYVAEKGSIT VDGISLTVND LRKNAFKLTI VPHTSAETTI DEFQVGRRVN 
LEVDVLARYM ERLLQGQQES EPQSRLTMAF LQQNGFA