Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1844 |
Symbol | |
ID | 5135134 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1961914 |
End bp | 1963272 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640533301 |
Product | hypothetical protein |
Protein accession | YP_001217768 |
Protein GI | 147673634 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000000001193 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGACA TATTGTGGAA CTTTATCGCC TTCATCATTG CGCTGGGCAT TCTCGTCGCA GTGCATGAGT TCGGACACTT CTGGGTTGCC AGACGTTGCG GTGTGAAAGT TGAGAAATTT TCTATCGGTT TTGGGAAATC GATTTGGAAA CGCGTCGGCC ATGACGGTAC AGAATACTCG ATATCGATGA TCCCACTCGG TGGTTACGTC AAAATGCTCG ATGGACGTGT GGATGATGTT CCCGCCGAAC AGCAAGCCAT GGCGTTTGAT AAGCAGTCAC TCTGGAAACG TTCTGCCATT GTGAGTGCGG GCCCCATTTT TAACTTCCTC TTCGCAATCT TTGCCTATTG GCTGGTGTTT ATGATCGGCG TACCAGCGGT CAAGCCTGTG ATTGGCGAAG TGACACCCTA CTCGATTGCG GCTCAAGCGG GCCTTGAGCC GGGTATGGAG ATCAAAGCGG TTTCTGGCGT GAATACTCCC GACTGGGAAT CGGTCAACAT GGGCTTAATT GGTCATATTG GCGATGACAG TATGACGATC ACCGTCTCCT CCGCCGAAGG GGTGGGATTG AATGAAATTA AGACAATAAA TCTGCGTGAT TGGAACTTTG ACCCAGAAAC AGAGTCTGCT ATGGGGGCGC TTGGCTTTAA ACCTTTTACC CCTGAGATTT CCAATCAGCT GACCAATGTT TCTGCGCAAG GTGCGGGTGA GCGTGCGGGT TTACAAGTCG GTGATACCGT GTTGCAAATC AATGGACAAG CGGTTGAGGC TTGGCAACAA GTGGTCAATG CAATTCAAAG TCATCCTAAC GCGCCTATCG CAGTTATGGT TGAGCGAGCA GGCCAGCAAG TTGAACTCAC TTTGATTCCC GATAGCCGTG AGCTTTCGCA AGGAAAAGTG ATTGGTTTTG CGGGAATCGC ACCAAAAGTC GCAGAATGGC CGCAAAACTA TCGATTTGAA TTGCAATTTG GTGTATTTGA GTCGCTTGGT AAAGCGGTTG AAAAAAGCGG ACAAGTGATT GACCTGACGG TCAGCATGTT GAAAAAACTG TTGGTGGGCG ATGTTGGGTT GAATAATCTC AGTGGTCCCA TTTCGATTGC TAAAGGCGCA GGAACAACGG CTGACTACGG CTTTGTGTAC TTTTTAGGCT TTTTGGCTCT GATCAGTATT AACCTTGGCA TTATCAACTT GGTGCCACTG CCGATGCTGG ATGGTGGTCA TCTGTTGTTT TTCATGATTG AAGCGGTGAT CCGTCGCCCT GTTCCGGAAA AGGTGCAGGA AATGGGTTAC CGGATTGGTG GTGCCATCAT TTTCTCTTTA ATGGCCGTTG CAATCTTTAA CGATTTTACT CACCTGTGA
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Protein sequence | MTDILWNFIA FIIALGILVA VHEFGHFWVA RRCGVKVEKF SIGFGKSIWK RVGHDGTEYS ISMIPLGGYV KMLDGRVDDV PAEQQAMAFD KQSLWKRSAI VSAGPIFNFL FAIFAYWLVF MIGVPAVKPV IGEVTPYSIA AQAGLEPGME IKAVSGVNTP DWESVNMGLI GHIGDDSMTI TVSSAEGVGL NEIKTINLRD WNFDPETESA MGALGFKPFT PEISNQLTNV SAQGAGERAG LQVGDTVLQI NGQAVEAWQQ VVNAIQSHPN APIAVMVERA GQQVELTLIP DSRELSQGKV IGFAGIAPKV AEWPQNYRFE LQFGVFESLG KAVEKSGQVI DLTVSMLKKL LVGDVGLNNL SGPISIAKGA GTTADYGFVY FLGFLALISI NLGIINLVPL PMLDGGHLLF FMIEAVIRRP VPEKVQEMGY RIGGAIIFSL MAVAIFNDFT HL
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