Gene VC0395_A1844 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1844 
Symbol 
ID5135134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1961914 
End bp1963272 
Gene Length1359 bp 
Protein Length452 aa 
Translation table11 
GC content49% 
IMG OID640533301 
Producthypothetical protein 
Protein accessionYP_001217768 
Protein GI147673634 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0750] Predicted membrane-associated Zn-dependent proteases 1 
TIGRFAM ID[TIGR00054] RIP metalloprotease RseP 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000001193 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGACA TATTGTGGAA CTTTATCGCC TTCATCATTG CGCTGGGCAT TCTCGTCGCA 
GTGCATGAGT TCGGACACTT CTGGGTTGCC AGACGTTGCG GTGTGAAAGT TGAGAAATTT
TCTATCGGTT TTGGGAAATC GATTTGGAAA CGCGTCGGCC ATGACGGTAC AGAATACTCG
ATATCGATGA TCCCACTCGG TGGTTACGTC AAAATGCTCG ATGGACGTGT GGATGATGTT
CCCGCCGAAC AGCAAGCCAT GGCGTTTGAT AAGCAGTCAC TCTGGAAACG TTCTGCCATT
GTGAGTGCGG GCCCCATTTT TAACTTCCTC TTCGCAATCT TTGCCTATTG GCTGGTGTTT
ATGATCGGCG TACCAGCGGT CAAGCCTGTG ATTGGCGAAG TGACACCCTA CTCGATTGCG
GCTCAAGCGG GCCTTGAGCC GGGTATGGAG ATCAAAGCGG TTTCTGGCGT GAATACTCCC
GACTGGGAAT CGGTCAACAT GGGCTTAATT GGTCATATTG GCGATGACAG TATGACGATC
ACCGTCTCCT CCGCCGAAGG GGTGGGATTG AATGAAATTA AGACAATAAA TCTGCGTGAT
TGGAACTTTG ACCCAGAAAC AGAGTCTGCT ATGGGGGCGC TTGGCTTTAA ACCTTTTACC
CCTGAGATTT CCAATCAGCT GACCAATGTT TCTGCGCAAG GTGCGGGTGA GCGTGCGGGT
TTACAAGTCG GTGATACCGT GTTGCAAATC AATGGACAAG CGGTTGAGGC TTGGCAACAA
GTGGTCAATG CAATTCAAAG TCATCCTAAC GCGCCTATCG CAGTTATGGT TGAGCGAGCA
GGCCAGCAAG TTGAACTCAC TTTGATTCCC GATAGCCGTG AGCTTTCGCA AGGAAAAGTG
ATTGGTTTTG CGGGAATCGC ACCAAAAGTC GCAGAATGGC CGCAAAACTA TCGATTTGAA
TTGCAATTTG GTGTATTTGA GTCGCTTGGT AAAGCGGTTG AAAAAAGCGG ACAAGTGATT
GACCTGACGG TCAGCATGTT GAAAAAACTG TTGGTGGGCG ATGTTGGGTT GAATAATCTC
AGTGGTCCCA TTTCGATTGC TAAAGGCGCA GGAACAACGG CTGACTACGG CTTTGTGTAC
TTTTTAGGCT TTTTGGCTCT GATCAGTATT AACCTTGGCA TTATCAACTT GGTGCCACTG
CCGATGCTGG ATGGTGGTCA TCTGTTGTTT TTCATGATTG AAGCGGTGAT CCGTCGCCCT
GTTCCGGAAA AGGTGCAGGA AATGGGTTAC CGGATTGGTG GTGCCATCAT TTTCTCTTTA
ATGGCCGTTG CAATCTTTAA CGATTTTACT CACCTGTGA
 
Protein sequence
MTDILWNFIA FIIALGILVA VHEFGHFWVA RRCGVKVEKF SIGFGKSIWK RVGHDGTEYS 
ISMIPLGGYV KMLDGRVDDV PAEQQAMAFD KQSLWKRSAI VSAGPIFNFL FAIFAYWLVF
MIGVPAVKPV IGEVTPYSIA AQAGLEPGME IKAVSGVNTP DWESVNMGLI GHIGDDSMTI
TVSSAEGVGL NEIKTINLRD WNFDPETESA MGALGFKPFT PEISNQLTNV SAQGAGERAG
LQVGDTVLQI NGQAVEAWQQ VVNAIQSHPN APIAVMVERA GQQVELTLIP DSRELSQGKV
IGFAGIAPKV AEWPQNYRFE LQFGVFESLG KAVEKSGQVI DLTVSMLKKL LVGDVGLNNL
SGPISIAKGA GTTADYGFVY FLGFLALISI NLGIINLVPL PMLDGGHLLF FMIEAVIRRP
VPEKVQEMGY RIGGAIIFSL MAVAIFNDFT HL