| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1843 |
|---|
| Symbol | |
|---|
| ID | 5137064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1959454 |
|---|
| End bp | 1961865 |
|---|
| Gene Length | 2412 bp |
|---|
| Protein Length | 803 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640533300 |
|---|
| Product | outer membrane protein assembly factor YaeT |
|---|
| Protein accession | YP_001217767 |
|---|
| Protein GI | 147675293 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
|---|
| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000194278 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATGA AACAGATTCT GCTCGCGACA CTGCTTGCCA CGAGCGTGTC GGCGAATGGT
GCCGAAAAAT TTGTGGTACA GGATATTCAA ATTGATGGCC TGCAAAGGGT CGCTTTGGGT
GCGGCGTTGT TGAAAATGCC TGTTCGAGTC GGCGACAGTG TCGATTCGCA AGATGTCGCG
AACATCATCA AAGCGCTCTA TTCCTCAGGT AACTTTGAGG ATGTCAAAGT ATTGCGTGAT
GGCAATACCT TGATGGTGCA GGTTAAAGAG CGCCCGACCA TTGCAAGCGT GTCGTTTTCT
GGCAACAAAG CGATCAAAGA GGAGCAACTC AAGCAAAACT TGGAAGCTTC GAGCATCCGA
GTTGGCGAAG CCTTGGATCG AACGACACTC AGCAATATTG AAAAAGGCTT AGAAGATTTT
TACTACAGCG TGGGTAAATA CAACGCGACC GTGAAAGCGG TGGTAACCCC ATTGCCGCGC
AACCGTGCTG ACCTTAAGTT TGTCTTTACT GAGGGCGTTT CCGCTAAGAT CCAACAGATC
AACTTTATCG GTAACCAAGT GTTTAGCGAT GAAGAGTTGC TGTCACGTTT TAACCTCAAC
GTTGATGTCG CATGGTGGAA CTTCCTTGCG GATGATAAGT ACAAGAAGCA AGTGCTGGCG
GGTGATATTG AAGCGCTGCG TACTTACTAT CTGGATCGCG GTTATCTGAA GTTTCAGGTT
GATAGCACAC AAGTGGCCAT CTCTCCCGAT AAGAAGGGCG TGTACATCAC GCTGAACTTG
AATGAAGGTG AGCCGTACAC GGTAAGCAAA GTGCAGTTCC GTGGTGAGCT GATGGGCAAA
GAGGCCGAGT TTACTTCTCT TATCCCATTT GAAATCGGCG AAACCTATAA CGGTTCTGCG
GTGACTAGAC TCGAAGAGAG TGTTAAGAAA GTGCTTGGGG AATCTGGCTA CGCCTATCCA
CAAGTACGCA CCATTCCTGA ATTTGATGAT GAAAAGCAGC AAGTGTCACT GGTGGTTCAT
GTCGAAGCGG GTAAACGTGT CTATGTCCGT GACATCCGTT TTGTCGGTAA CAACAGCACT
CGTGATGAAG TCTTGCGCCG TGAAATGCGT CAGATGGAAG GCTCCTGGCT CAACTCAAAA
GACATCGAAA CCGGTAAGAC TCGTCTCAAT CGTTTAGGTT TCTTTGAAAC GGTAGAAGTG
CAAACGGTGC GCGTGCCTGG TAGTGAAGAC CAAGTGGATC TTGTTTACAG CGTAAAAGAG
GCGAACTCAG GCAACGTCAA CTTCGGTGTC GGTTACGGTA CTGAATCCGG GGTGAGCTTC
CAAGTCGGTC TGCAACAAGA CAACTTCTTA GGTTCGGGTA ACCGCGTTGG CGTGAATGCC
ATGATCAACG ATTATCAGAA AAACCTGACG TTAGAATATC GCGATCCTTA CTGGAACCTC
GATGGTGTCA GCTTGGGCGG CAAAGTTTTC TACAACCAGT TTGAAGCTTC TGAAGCGGGC
ATTGTTGACT ATACCAACGA AAGTTACGGA ACCAGTTTGA CTTGGGGTTT CCCATTTGAT
GAATTGAACC GATTTGAGTT TGGTATTGGT TACACCCACA ACAAGATTGG TAACTTAACG
CCTTATCTGC AAGTGGAAAA CTTCCTTGCT GCGCAGGCGA GTAACATCGA TTCTGGCGGT
AACTTGTTGA CCGATGACTT CGATATCAAC TTATCTTGGA CGCGTAATAA CCTCAATAAC
AGCTATTTTC CGACGGCGGG TAACCACCAG CGTGCTTTCT ACAAAATGAC AGTGCCGGGG
TCGGACGCGC AGTACTTTAA GCTGCAATAC GATGTTCGTC AGTATTTCCC GTTGACCAAG
AAACATGAGT TTACCTTACT GCTGCGTGGC CGTTTAGGTT ACGGTAACGG TTATGGTCAA
ACGGATGGAA AAGATAACTT GTTCCCGTTT TATGAGAACT TCTATGCGGG CGGCTTTACC
TCATTACGTG GTTTTGGGTC AAACTCTGCA GGTCCTAAAG CGGTGTACCG TGACTACTCG
GGTTCGAACA ATGGCTCCGA TACTGCCACC GATGATTCGG TAGGGGGTAA CGCGATTGCT
CTTGCCAGCG TAGAGCTGAT TGTACCAACG CCGTTTGCTT CAGAAGAAGC ACGCAACCAA
ATTCGTACCA GTATCTTCTA CGATATGGCG AGCGTGTGGG ATACCGAGTT CGATTATCGT
GGTAAAGCGG ATTATGGTAA CCAGTACTAT TACGATTATT CAGATCCAAC CAATTACCGC
TCATCTTACG GTGTGGCGTT GCAGTGGGTG TCACCAATGG GACCTTTAGT GTTCTCATTG
GCTAAACCGA TTAAAAAGTA TGAGGGTGAT GACGAAGAAT TCTTCACCTT CACCATTGGA
AGAACCTTCT AG
|
|---|
| Protein sequence | MAMKQILLAT LLATSVSANG AEKFVVQDIQ IDGLQRVALG AALLKMPVRV GDSVDSQDVA
NIIKALYSSG NFEDVKVLRD GNTLMVQVKE RPTIASVSFS GNKAIKEEQL KQNLEASSIR
VGEALDRTTL SNIEKGLEDF YYSVGKYNAT VKAVVTPLPR NRADLKFVFT EGVSAKIQQI
NFIGNQVFSD EELLSRFNLN VDVAWWNFLA DDKYKKQVLA GDIEALRTYY LDRGYLKFQV
DSTQVAISPD KKGVYITLNL NEGEPYTVSK VQFRGELMGK EAEFTSLIPF EIGETYNGSA
VTRLEESVKK VLGESGYAYP QVRTIPEFDD EKQQVSLVVH VEAGKRVYVR DIRFVGNNST
RDEVLRREMR QMEGSWLNSK DIETGKTRLN RLGFFETVEV QTVRVPGSED QVDLVYSVKE
ANSGNVNFGV GYGTESGVSF QVGLQQDNFL GSGNRVGVNA MINDYQKNLT LEYRDPYWNL
DGVSLGGKVF YNQFEASEAG IVDYTNESYG TSLTWGFPFD ELNRFEFGIG YTHNKIGNLT
PYLQVENFLA AQASNIDSGG NLLTDDFDIN LSWTRNNLNN SYFPTAGNHQ RAFYKMTVPG
SDAQYFKLQY DVRQYFPLTK KHEFTLLLRG RLGYGNGYGQ TDGKDNLFPF YENFYAGGFT
SLRGFGSNSA GPKAVYRDYS GSNNGSDTAT DDSVGGNAIA LASVELIVPT PFASEEARNQ
IRTSIFYDMA SVWDTEFDYR GKADYGNQYY YDYSDPTNYR SSYGVALQWV SPMGPLVFSL
AKPIKKYEGD DEEFFTFTIG RTF
|
|---|
| |