Gene VC0395_A1836 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1836 
SymboldnaE 
ID5136672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1951075 
End bp1954569 
Gene Length3495 bp 
Protein Length1164 aa 
Translation table11 
GC content51% 
IMG OID640533293 
ProductDNA polymerase III subunit alpha 
Protein accessionYP_001217760 
Protein GI147675187 
COG category[L] Replication, recombination and repair 
COG ID[COG0587] DNA polymerase III, alpha subunit 
TIGRFAM ID[TIGR00594] DNA-directed DNA polymerase III (polc) 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGATACTC CTTGCATGTC AGACCCAAAG TTCATCCACT TACGTATACA CAGTGATTTC 
TCTATGGTGG ATGGTTTGTC CAAAGTCCCG CCATTGGTGA AAAAAGTGGC GGCAATGGGC
ATGCCCGCAA TGGCCTTGAC CGATTTCACC AACCTGTGTG GCTTGGTGAA GTTTTACAGC
ACCGCGCATA ACTGCGGGGT TAAGCCAATC ATTGGCGCCG ACTTTACTTT GCAATCGGAA
GAGTTCGGTG ATGAGCTGAC CAAACTGACC TTGCTTGCTA AAAACAATGT CGGTTACAAA
AACCTCACCT TATTGATTTC TAAAGCCTAT TTACGCGGCC ATGTCCAGCA TCAACCTGTG
ATTGATAAAG CGTGGTTGGT CGAGCATGCC GAAGGGCTGA TTGTGCTCTC GGGAGGCAAA
AGTGGCGAAG TGGGGCGCGC ATTACTCAAA GGCAACCAAC AACAAGTAGA AAGATGCATT
GAGTTTTACC AAACTCACTT TGCCGATCAT TTCTATCTAG AGCTTATCCG CACTGGCCGT
GCTGATGAAG AGAGCTACTT ACATTTTGCG CTGGATGTGG CAGAGCAGTA CGACTTGCCC
GTCGTGGCAA CCAACGAAGT GGTGTTCATC ACTGAAGAGT CGTTTGAAGC CCACGAAATC
CGAGTCGCGA TTCACGATGG TTATACGCTG GAAGATCCAC GCCGTCCGAA AAATTACAGT
CCGAAGCAGT ATCTGCGCAG CGAAGCGGAG ATGTGTGAGC TGTTTGCAGA CATTCCAGAA
GCGTTAGCCA ACAGTGTCGA GATTGCCAAA CGTTGTAACG TGACCGTACG TTTGGGCGAA
TATTTCCTAC CTAACTTCCC AACGGGCGGG ATGGCGATTG AAGATTTTCT GGTGATGAAA
TCTCGCGAAG GGTTGGAAGA GCGACTCGAA TTTCTTTTCC CAGATCCAGA AGTTCGTGCC
AAGCGTCGCC CTGAATATGA TGAGCGTTTG CAAGTTGAGC TCGATGTGAT TAACCAGATG
GGCTTTCCCG GATACTTCTT GATCGTGATG GAGTTTATCC AGTGGTCAAA AGATAACGAT
ATTCCAGTCG GTCCGGGACG GGGCTCGGGG GCGGGCTCAT TGGTAGCGTA TGCACTGAAA
ATCACCGACC TTGATCCGCT GGAATACGAT CTGCTGTTCG AGCGTTTCTT GAATCCAGAG
CGGGTCTCCA TGCCCGACTT CGACGTCGAT TTCTGTATGG ATAAGCGTGA TCAAGTAATT
GATCACGTAG CGGAAATGTA TGGTCGTGAT GCGGTATCAC AAATCATCAC TTTCGGTACC
ATGGCGGCGA AAGCGGTTAT TCGCGATGTG GGGCGTGTAC TTGGTCATCC GTTCGGTTTT
GTCGATCGCA TTTCCAAATT AGTGCCACCC GATCCGGGTA TGACGCTCGA GAAAGCCTTT
ATCGCCGAGC CTGCACTGCA AGAGCTGTAT GACGCGGATG AGGAAGTCAA AGAGCTGATC
GACAAGTGTC GAATTCTGGA AGGCTGTACC CGTAACGCTG GTAAACACGC TGGGGGCGTG
GTGATTTCGC CCACTGCCAT CACTGACTTT GCGCCGATTT ACTGTGATGC GGAAGGCAAC
TTCCCGGTTA CTCAGTTCGA TAAGAACGAT GTGGAAACTG CCGGTCTGGT CAAATTTGAC
TTCTTGGGGC TGCGTACCCT TACCATTATT GACTGGGCTT TGGGCTTAGT GAACCCGCGT
TTGAAAAAGG CGGGCAAACC CCCCGTGCGG ATTGAAGCGA TCCCGCTCGA CGATGCGCGC
TCTTTCCGTA ACCTGCAAGA TGCCAAAACC ACCGCGGTAT TCCAGCTCGA ATCGCGCGGT
ATGAAAGAGC TGATTAAGCG ACTGCAACCC GACTGTTTTG AAGACATCAT CGCTCTGGTG
GCGCTGTTTC GTCCGGGGCC GTTGCAATCC GGCATGGTGG ATAACTTTAT CGACCGTAAG
CATGGCCGAG AAGCCATCTC TTATCCGGAT GAAAAGTGGC AACATGAATC GCTCAAAGAG
ATCCTAGAAC CGACCTACGG CATCATCCTC TATCAGGAGC AGGTGATGCA GATCGCGCAG
GTACTGTCGG GTTACACCTT GGGTGGGGCA GACATGCTGC GCCGTGCAAT GGGTAAGAAA
AAGCCAGAAG AAATGGCTAA GCAGCGCGCT GTGTTCCAAG AAGGGGCGGA GAAAAATGGC
GTCGATGGTG AGTTGGCGAT GAAAATCTTC GATCTGGTGG AAAAATTCGC CGGATACGGA
TTTAACAAAT CGCACTCTGC CGCTTATGCG CTGGTTTCCT ACCAAACCTT ATGGTTGAAA
ACCCACTATC CAGCCGAGTT TATGGCGGCG GTAATGACCG CGGATATGGA CAACACGGAA
AAAGTGGTTG GCCTAGTGGA TGAGTGTAAA AACATGGGAT TGACCGTGTT GCCACCGGAC
ATTAACTCGG GTCTTTATCG CTTTAACGTC GATGACAACG GCGCGATTGT TTATGGTATT
GGCGCAATTA AAGGGGTGGG TGAAGGTCCG ATTGAAGCGA TTTTGGAAGC GCGCAACAAA
GGGGGATATT TCAAAGATCT GTTTGATTTC TGCGCGCGGA TTGATCTGAA AAAGGTCAAC
AAACGGGTAA TTGAAAAACT GATCTTGGCT GGCGCCCTGG ATAGATTAGG CCCGCATCGC
GCAGCCATGA TGGCCTCAGT GGATGATGCG GTGCGTGCAG CAAGCCAACA TCACCAAGCG
GAAGCGTTTG GACAAGCGGA TATGTTCGGT GTGCTCACGG ATGCGCCAGA AGAAGTCGAG
CAGAAATACA CGCAAGTGCC AGAATGGCCA GAAAAAGTGC GTTTGGAAGG GGAGCGCGAG
ACGCTTGGGC TCTATCTCAC CGGCCATCCG GTGGATGAAT ACCTGAAAGA GCTCACCAAA
TACACCAGTT GCCGTTTGAA TGAAGCCGCA CCAACCCGGC GTGATCAATC CTTAACCGTT
GCCGGATTGG TGATTGCAGC GCGGGTGATG ACCACCAAAC GTGGCACGCG AATTGGTTTA
ATGACTTTAG ATGACCGCTC GGGCCGTATG GAAGTGATGC TTTACTCGGA AGCACTCGAT
CGGTATGCAG AATGGTTAGA AAAAGATAAA ATTCTGGTGG TTTCCGGACA GGTCAGCTTT
GATGACTTCA ATGGCGGACT TAAAATGTCG GCGCGCGAGG TCATGGACTT GGGCAGCGCG
CGTGAAAAAT TTGCCCGCGG TTTATCGATC TCGATTTTAC AGTCGCAGAT TGATCAACAA
TTTTTTGAGC GTTTTAGTCA CATACTGGAA CCTCACCGCG CAGGAACCGT ACCTGTCAAT
GTATACTACC AGCGCCCTGA TGCGCGAGCG CGCCTGACGT TAGGCACAGA GTGGCGAGTT
ACGCCAAGCG ATACATTGTT AGACGAATTA AAGCAGCTAC TTGGTCATGA TCAGGTAGAA
CTCGAATTTA ACTAA
 
Protein sequence
MDTPCMSDPK FIHLRIHSDF SMVDGLSKVP PLVKKVAAMG MPAMALTDFT NLCGLVKFYS 
TAHNCGVKPI IGADFTLQSE EFGDELTKLT LLAKNNVGYK NLTLLISKAY LRGHVQHQPV
IDKAWLVEHA EGLIVLSGGK SGEVGRALLK GNQQQVERCI EFYQTHFADH FYLELIRTGR
ADEESYLHFA LDVAEQYDLP VVATNEVVFI TEESFEAHEI RVAIHDGYTL EDPRRPKNYS
PKQYLRSEAE MCELFADIPE ALANSVEIAK RCNVTVRLGE YFLPNFPTGG MAIEDFLVMK
SREGLEERLE FLFPDPEVRA KRRPEYDERL QVELDVINQM GFPGYFLIVM EFIQWSKDND
IPVGPGRGSG AGSLVAYALK ITDLDPLEYD LLFERFLNPE RVSMPDFDVD FCMDKRDQVI
DHVAEMYGRD AVSQIITFGT MAAKAVIRDV GRVLGHPFGF VDRISKLVPP DPGMTLEKAF
IAEPALQELY DADEEVKELI DKCRILEGCT RNAGKHAGGV VISPTAITDF APIYCDAEGN
FPVTQFDKND VETAGLVKFD FLGLRTLTII DWALGLVNPR LKKAGKPPVR IEAIPLDDAR
SFRNLQDAKT TAVFQLESRG MKELIKRLQP DCFEDIIALV ALFRPGPLQS GMVDNFIDRK
HGREAISYPD EKWQHESLKE ILEPTYGIIL YQEQVMQIAQ VLSGYTLGGA DMLRRAMGKK
KPEEMAKQRA VFQEGAEKNG VDGELAMKIF DLVEKFAGYG FNKSHSAAYA LVSYQTLWLK
THYPAEFMAA VMTADMDNTE KVVGLVDECK NMGLTVLPPD INSGLYRFNV DDNGAIVYGI
GAIKGVGEGP IEAILEARNK GGYFKDLFDF CARIDLKKVN KRVIEKLILA GALDRLGPHR
AAMMASVDDA VRAASQHHQA EAFGQADMFG VLTDAPEEVE QKYTQVPEWP EKVRLEGERE
TLGLYLTGHP VDEYLKELTK YTSCRLNEAA PTRRDQSLTV AGLVIAARVM TTKRGTRIGL
MTLDDRSGRM EVMLYSEALD RYAEWLEKDK ILVVSGQVSF DDFNGGLKMS AREVMDLGSA
REKFARGLSI SILQSQIDQQ FFERFSHILE PHRAGTVPVN VYYQRPDARA RLTLGTEWRV
TPSDTLLDEL KQLLGHDQVE LEFN