Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1836 |
Symbol | dnaE |
ID | 5136672 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1951075 |
End bp | 1954569 |
Gene Length | 3495 bp |
Protein Length | 1164 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640533293 |
Product | DNA polymerase III subunit alpha |
Protein accession | YP_001217760 |
Protein GI | 147675187 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGATACTC CTTGCATGTC AGACCCAAAG TTCATCCACT TACGTATACA CAGTGATTTC TCTATGGTGG ATGGTTTGTC CAAAGTCCCG CCATTGGTGA AAAAAGTGGC GGCAATGGGC ATGCCCGCAA TGGCCTTGAC CGATTTCACC AACCTGTGTG GCTTGGTGAA GTTTTACAGC ACCGCGCATA ACTGCGGGGT TAAGCCAATC ATTGGCGCCG ACTTTACTTT GCAATCGGAA GAGTTCGGTG ATGAGCTGAC CAAACTGACC TTGCTTGCTA AAAACAATGT CGGTTACAAA AACCTCACCT TATTGATTTC TAAAGCCTAT TTACGCGGCC ATGTCCAGCA TCAACCTGTG ATTGATAAAG CGTGGTTGGT CGAGCATGCC GAAGGGCTGA TTGTGCTCTC GGGAGGCAAA AGTGGCGAAG TGGGGCGCGC ATTACTCAAA GGCAACCAAC AACAAGTAGA AAGATGCATT GAGTTTTACC AAACTCACTT TGCCGATCAT TTCTATCTAG AGCTTATCCG CACTGGCCGT GCTGATGAAG AGAGCTACTT ACATTTTGCG CTGGATGTGG CAGAGCAGTA CGACTTGCCC GTCGTGGCAA CCAACGAAGT GGTGTTCATC ACTGAAGAGT CGTTTGAAGC CCACGAAATC CGAGTCGCGA TTCACGATGG TTATACGCTG GAAGATCCAC GCCGTCCGAA AAATTACAGT CCGAAGCAGT ATCTGCGCAG CGAAGCGGAG ATGTGTGAGC TGTTTGCAGA CATTCCAGAA GCGTTAGCCA ACAGTGTCGA GATTGCCAAA CGTTGTAACG TGACCGTACG TTTGGGCGAA TATTTCCTAC CTAACTTCCC AACGGGCGGG ATGGCGATTG AAGATTTTCT GGTGATGAAA TCTCGCGAAG GGTTGGAAGA GCGACTCGAA TTTCTTTTCC CAGATCCAGA AGTTCGTGCC AAGCGTCGCC CTGAATATGA TGAGCGTTTG CAAGTTGAGC TCGATGTGAT TAACCAGATG GGCTTTCCCG GATACTTCTT GATCGTGATG GAGTTTATCC AGTGGTCAAA AGATAACGAT ATTCCAGTCG GTCCGGGACG GGGCTCGGGG GCGGGCTCAT TGGTAGCGTA TGCACTGAAA ATCACCGACC TTGATCCGCT GGAATACGAT CTGCTGTTCG AGCGTTTCTT GAATCCAGAG CGGGTCTCCA TGCCCGACTT CGACGTCGAT TTCTGTATGG ATAAGCGTGA TCAAGTAATT GATCACGTAG CGGAAATGTA TGGTCGTGAT GCGGTATCAC AAATCATCAC TTTCGGTACC ATGGCGGCGA AAGCGGTTAT TCGCGATGTG GGGCGTGTAC TTGGTCATCC GTTCGGTTTT GTCGATCGCA TTTCCAAATT AGTGCCACCC GATCCGGGTA TGACGCTCGA GAAAGCCTTT ATCGCCGAGC CTGCACTGCA AGAGCTGTAT GACGCGGATG AGGAAGTCAA AGAGCTGATC GACAAGTGTC GAATTCTGGA AGGCTGTACC CGTAACGCTG GTAAACACGC TGGGGGCGTG GTGATTTCGC CCACTGCCAT CACTGACTTT GCGCCGATTT ACTGTGATGC GGAAGGCAAC TTCCCGGTTA CTCAGTTCGA TAAGAACGAT GTGGAAACTG CCGGTCTGGT CAAATTTGAC TTCTTGGGGC TGCGTACCCT TACCATTATT GACTGGGCTT TGGGCTTAGT GAACCCGCGT TTGAAAAAGG CGGGCAAACC CCCCGTGCGG ATTGAAGCGA TCCCGCTCGA CGATGCGCGC TCTTTCCGTA ACCTGCAAGA TGCCAAAACC ACCGCGGTAT TCCAGCTCGA ATCGCGCGGT ATGAAAGAGC TGATTAAGCG ACTGCAACCC GACTGTTTTG AAGACATCAT CGCTCTGGTG GCGCTGTTTC GTCCGGGGCC GTTGCAATCC GGCATGGTGG ATAACTTTAT CGACCGTAAG CATGGCCGAG AAGCCATCTC TTATCCGGAT GAAAAGTGGC AACATGAATC GCTCAAAGAG ATCCTAGAAC CGACCTACGG CATCATCCTC TATCAGGAGC AGGTGATGCA GATCGCGCAG GTACTGTCGG GTTACACCTT GGGTGGGGCA GACATGCTGC GCCGTGCAAT GGGTAAGAAA AAGCCAGAAG AAATGGCTAA GCAGCGCGCT GTGTTCCAAG AAGGGGCGGA GAAAAATGGC GTCGATGGTG AGTTGGCGAT GAAAATCTTC GATCTGGTGG AAAAATTCGC CGGATACGGA TTTAACAAAT CGCACTCTGC CGCTTATGCG CTGGTTTCCT ACCAAACCTT ATGGTTGAAA ACCCACTATC CAGCCGAGTT TATGGCGGCG GTAATGACCG CGGATATGGA CAACACGGAA AAAGTGGTTG GCCTAGTGGA TGAGTGTAAA AACATGGGAT TGACCGTGTT GCCACCGGAC ATTAACTCGG GTCTTTATCG CTTTAACGTC GATGACAACG GCGCGATTGT TTATGGTATT GGCGCAATTA AAGGGGTGGG TGAAGGTCCG ATTGAAGCGA TTTTGGAAGC GCGCAACAAA GGGGGATATT TCAAAGATCT GTTTGATTTC TGCGCGCGGA TTGATCTGAA AAAGGTCAAC AAACGGGTAA TTGAAAAACT GATCTTGGCT GGCGCCCTGG ATAGATTAGG CCCGCATCGC GCAGCCATGA TGGCCTCAGT GGATGATGCG GTGCGTGCAG CAAGCCAACA TCACCAAGCG GAAGCGTTTG GACAAGCGGA TATGTTCGGT GTGCTCACGG ATGCGCCAGA AGAAGTCGAG CAGAAATACA CGCAAGTGCC AGAATGGCCA GAAAAAGTGC GTTTGGAAGG GGAGCGCGAG ACGCTTGGGC TCTATCTCAC CGGCCATCCG GTGGATGAAT ACCTGAAAGA GCTCACCAAA TACACCAGTT GCCGTTTGAA TGAAGCCGCA CCAACCCGGC GTGATCAATC CTTAACCGTT GCCGGATTGG TGATTGCAGC GCGGGTGATG ACCACCAAAC GTGGCACGCG AATTGGTTTA ATGACTTTAG ATGACCGCTC GGGCCGTATG GAAGTGATGC TTTACTCGGA AGCACTCGAT CGGTATGCAG AATGGTTAGA AAAAGATAAA ATTCTGGTGG TTTCCGGACA GGTCAGCTTT GATGACTTCA ATGGCGGACT TAAAATGTCG GCGCGCGAGG TCATGGACTT GGGCAGCGCG CGTGAAAAAT TTGCCCGCGG TTTATCGATC TCGATTTTAC AGTCGCAGAT TGATCAACAA TTTTTTGAGC GTTTTAGTCA CATACTGGAA CCTCACCGCG CAGGAACCGT ACCTGTCAAT GTATACTACC AGCGCCCTGA TGCGCGAGCG CGCCTGACGT TAGGCACAGA GTGGCGAGTT ACGCCAAGCG ATACATTGTT AGACGAATTA AAGCAGCTAC TTGGTCATGA TCAGGTAGAA CTCGAATTTA ACTAA
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Protein sequence | MDTPCMSDPK FIHLRIHSDF SMVDGLSKVP PLVKKVAAMG MPAMALTDFT NLCGLVKFYS TAHNCGVKPI IGADFTLQSE EFGDELTKLT LLAKNNVGYK NLTLLISKAY LRGHVQHQPV IDKAWLVEHA EGLIVLSGGK SGEVGRALLK GNQQQVERCI EFYQTHFADH FYLELIRTGR ADEESYLHFA LDVAEQYDLP VVATNEVVFI TEESFEAHEI RVAIHDGYTL EDPRRPKNYS PKQYLRSEAE MCELFADIPE ALANSVEIAK RCNVTVRLGE YFLPNFPTGG MAIEDFLVMK SREGLEERLE FLFPDPEVRA KRRPEYDERL QVELDVINQM GFPGYFLIVM EFIQWSKDND IPVGPGRGSG AGSLVAYALK ITDLDPLEYD LLFERFLNPE RVSMPDFDVD FCMDKRDQVI DHVAEMYGRD AVSQIITFGT MAAKAVIRDV GRVLGHPFGF VDRISKLVPP DPGMTLEKAF IAEPALQELY DADEEVKELI DKCRILEGCT RNAGKHAGGV VISPTAITDF APIYCDAEGN FPVTQFDKND VETAGLVKFD FLGLRTLTII DWALGLVNPR LKKAGKPPVR IEAIPLDDAR SFRNLQDAKT TAVFQLESRG MKELIKRLQP DCFEDIIALV ALFRPGPLQS GMVDNFIDRK HGREAISYPD EKWQHESLKE ILEPTYGIIL YQEQVMQIAQ VLSGYTLGGA DMLRRAMGKK KPEEMAKQRA VFQEGAEKNG VDGELAMKIF DLVEKFAGYG FNKSHSAAYA LVSYQTLWLK THYPAEFMAA VMTADMDNTE KVVGLVDECK NMGLTVLPPD INSGLYRFNV DDNGAIVYGI GAIKGVGEGP IEAILEARNK GGYFKDLFDF CARIDLKKVN KRVIEKLILA GALDRLGPHR AAMMASVDDA VRAASQHHQA EAFGQADMFG VLTDAPEEVE QKYTQVPEWP EKVRLEGERE TLGLYLTGHP VDEYLKELTK YTSCRLNEAA PTRRDQSLTV AGLVIAARVM TTKRGTRIGL MTLDDRSGRM EVMLYSEALD RYAEWLEKDK ILVVSGQVSF DDFNGGLKMS AREVMDLGSA REKFARGLSI SILQSQIDQQ FFERFSHILE PHRAGTVPVN VYYQRPDARA RLTLGTEWRV TPSDTLLDEL KQLLGHDQVE LEFN
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