| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1817 |
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| Symbol | |
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| ID | 5137537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1931323 |
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| End bp | 1932861 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640533274 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001217741 |
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| Protein GI | 147673860 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTATATG GATTACGTTT CACTCATTAC ACTCGCTTAT TAGAACAAAG GATGCGCTTC
TGTTTTCCAC TGATGGAGCA GAAGATTGAA GTAAGCAGTA CTAGCAGGAT GCTCATTATG
ACGCGAAAGA AATTTAGTTG GATTCTTGTC ACCCTGATTA TTTTTGGTTT TTTTGTAACG
AGCTTGGTCA GCTATAAAGT GGCTCATGAC ACGCTTGAAG AGCAAATCAA TAAAGATTCA
CTGCCATTGA CCAGCGATAA TATTTATTCG GAAATTCAGC AGGATCTGAT CCGTCCGATC
TTCATCTCCT CACTAATGGC TCAAGACACG TTTGTGCGCG AGTGGACTTT GGCGGGAGAG
CAAGACCCAG AAAGGATCAT CCGTTATTTG CGTGAAATTC AGCGTCAATA TCAAACGATC
TCCAGTTTCT ATATCTCGGA TCGCACCGGT CATTACTACC ACTACACAGG CATACTCAAA
CAAGTATCGG AATCGAATCC GAATGATGCT TGGTTTTATC GCGTTAAAAA CTCCGCGCCA
GATAAGAATT TTGAAGTCAA TATCGACATA GATACCGCGA ATAGCCAACA AACCGTGGTG
TTTGTGAATT ACAAAGTGTT TGATTTTGAA AATCGTTTTC TCGGTGTGAT TGGGGTTGGG
CTGAGCTCTG ATGCGGTTTC CGCATTAGTC GAGAAATATC AAAAACGGTA TAACCGCCAC
ATCTATTTCA TCAATGAGTT GGGAGAGGTG ACTTTACACG GATCTCACCA TCCGGGGTTT
GATCAGATTC AGCAGCGTGA AGGGCTCAAA ACCTTAGCCA CTCAAATCCT GACCTCTCCG
AGTGTGGGTG CTAGCTATTA TGCGGACGGA CAGAAAGTCT ACCTCAATAG CCGTTGGGTC
GATGAGTTTC AGTGGTACAT CATTGTGGAG CAGAAAGATG AGTTTAATCA CGACATCTGG
TTTAAAGCGA CATTAGGCAA TTTAGCCATC AGTGCTTTTG TGGCGTTGGG AGTGCTTGGT
TTAGCGCAAA TGAGTTTTCG AGGCTATCAA AAACGGCTGG AAGATATGGC GGTGCGCGAT
AAATTGACCG GAGCATACAA CCGACAAGTT TTTGAAGAGC TCGTCGATGA CGCTATTTCT
TTGGCCAATA AAGAGAGTCA CCCTTTAAGT CTGGCTGTGA TCGATCTTGA CCATTTCAAA
CAGGTGAATG ACAACTATGG GCATCCCGCG GGGGATCTGG TTTTACAACG GGTGGTTGCA
CTGTGTCAGC GTCATATTGC TCAGGTAGGA ACTTTGTGTC GGTGGGGCGG TGAAGAATTT
GTGGTTTTGC TGCCGCATAT GACGCAGCAA GAAGCCTATC AGCGTATGGA GAGTATCCGC
GCTGAGATTG CTATGCACGC GAGCCAACCA CAAGTTACCG TCAGCATTGG TGTGGTGCAA
TACCAGCAGA ATGAGAGTTT GTTACATCTA TTCAATCGTG CGGATCAAGC TATGTATACC
GCGAAAAGCG AAGGGCGTAA TAAGGTCGTT GGCTTGTGA
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| Protein sequence | MVYGLRFTHY TRLLEQRMRF CFPLMEQKIE VSSTSRMLIM TRKKFSWILV TLIIFGFFVT
SLVSYKVAHD TLEEQINKDS LPLTSDNIYS EIQQDLIRPI FISSLMAQDT FVREWTLAGE
QDPERIIRYL REIQRQYQTI SSFYISDRTG HYYHYTGILK QVSESNPNDA WFYRVKNSAP
DKNFEVNIDI DTANSQQTVV FVNYKVFDFE NRFLGVIGVG LSSDAVSALV EKYQKRYNRH
IYFINELGEV TLHGSHHPGF DQIQQREGLK TLATQILTSP SVGASYYADG QKVYLNSRWV
DEFQWYIIVE QKDEFNHDIW FKATLGNLAI SAFVALGVLG LAQMSFRGYQ KRLEDMAVRD
KLTGAYNRQV FEELVDDAIS LANKESHPLS LAVIDLDHFK QVNDNYGHPA GDLVLQRVVA
LCQRHIAQVG TLCRWGGEEF VVLLPHMTQQ EAYQRMESIR AEIAMHASQP QVTVSIGVVQ
YQQNESLLHL FNRADQAMYT AKSEGRNKVV GL
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