| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1777 |
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| Symbol | tnpA |
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| ID | 5136472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1885708 |
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| End bp | 1886145 |
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| Gene Length | 438 bp |
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| Protein Length | 145 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640533234 |
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| Product | IS1004 transposase |
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| Protein accession | YP_001217702 |
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| Protein GI | 147673504 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1943] Transposase and inactivated derivatives |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0000140938 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGCGACT ACAGAAGTTC ATCACACGTC TATTGGCGTT GCAAATATCA TATCGTTTGG
ACACCAAAAT TTCGTTTTAA GATCTTAAAA GGTAATGTAG CCAAAGAGCT AAATCGTTCG
ATCTACATTC TTTGTAATAT GAAAGATTGT GAAGTTTTGG AACTCAATGT TCAGCCAGAT
CATGTCCACT TAGTTGCGAT AATTCCGCCC AAAGTATCGA TTTCGACGTT GATGGGAGTT
TTAAAGGGTA GGAGTGCAAT TAGGCTATTC AACAAGTTTC CACATATCAG GAAAAAGTTA
TGGGGAAATC ATTTTTGGGC GCGAGGCTAT TTTGTGGATA CGGTAGGTGT AAATGAAGAA
ATCATTAGAC GGTATGTACG GCATCAAGAC AAAAAAGAGC TTGAGCAAGA GCAGCAGTTA
GAGTTATTGA GAGACTAA
|
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| Protein sequence | MGDYRSSSHV YWRCKYHIVW TPKFRFKILK GNVAKELNRS IYILCNMKDC EVLELNVQPD
HVHLVAIIPP KVSISTLMGV LKGRSAIRLF NKFPHIRKKL WGNHFWARGY FVDTVGVNEE
IIRRYVRHQD KKELEQEQQL ELLRD
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