Gene VC0395_A1756 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1756 
SymbolprfA 
ID5136957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1876730 
End bp1877818 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content50% 
IMG OID640533213 
Productpeptide chain release factor 1 
Protein accessionYP_001217695 
Protein GI147674456 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000801734 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCGT CGATTTTAAG CAAGCTTGAA TCCCTTGTTG AGCGCTATGA AGAGGTTCAG 
CACCTCCTTG GCGACCCAAC AGTTATCGGT GATCAAAATA AATTCCGTGC TCTATCCAAA
GAGTATTCGC AACTGGAAGA GATCACTCAG TGTTTCCAAG CTTACCAACA AGCGAAGGAA
GATCTGGTTG CTGCCGAAGA GATGGCACAA GAAGATGATG CAGAAATGCG TGAAATGGCA
CAGGACGAGA TCAAAGCGGC GAAAGCGGCA ATTGAGCGCC TGACCGATGA ACTGCAAATT
CTGTTGCTGC CAAAAGATCC AAACGATGAT CGCAACTGTT TCTTAGAAAT TCGCGCGGGT
GCGGGTGGTG ACGAAGCGGG TATTTTTGCC GGCGATTTGT TCCGTATGTA CAGCCGTTTT
GCGGAGAAAA AAGGCTGGCG CATCGAAGTG ATGTCATCGA GTGAAGCGGA ACACGGCGGC
TACAAAGAGA TGATCGCGAA AGTGAACGGT GACGGTGCTT ACGGTACGCT CAAGTTTGAA
TCTGGCGGCC ACCGAGTGCA ACGTGTTCCG GCTACGGAAG CGCAAGGGCG TATCCACACG
TCCGCTTGTA CCGTTGCGGT GATGCCTGAA ATTCCTGAAG CGGAAATTCC AGAAATCAAA
GCCAGCGATC TGAAAATTGA TACGTTCCGC TCTTCTGGCG CGGGTGGTCA GCACGTTAAC
ACCACCGATT CGGCTATCCG TATCACTCAC TTACCGACTG GTATTGTGGT CGAGTGTCAG
GATGAGCGTT CGCAACATAA GAACAAAGCT AAAGCGATGT CAGTATTGGC TGCACGTATT
GCTCAAGCTG AAGAGTCAAA ACGCGCTGCG GAAATTTCCG ATACACGCCG CAACCTTCTG
GGTTCAGGCG ATCGTAGTGA CCGCATTCGC ACTTATAACT ACCCGCAAGG TCGAGTGTCC
GATCACCGTA TCAATTTGAC GGTATATCGC CTGACCGAAG TGATGGAAGG GGATATGCAA
TCCTTGATTG ACCCTGTGAT TCACGAGCAT CAAGCGGATC AATTGGCGGC ACTGGCGGAT
CAAAACTAA
 
Protein sequence
MKASILSKLE SLVERYEEVQ HLLGDPTVIG DQNKFRALSK EYSQLEEITQ CFQAYQQAKE 
DLVAAEEMAQ EDDAEMREMA QDEIKAAKAA IERLTDELQI LLLPKDPNDD RNCFLEIRAG
AGGDEAGIFA GDLFRMYSRF AEKKGWRIEV MSSSEAEHGG YKEMIAKVNG DGAYGTLKFE
SGGHRVQRVP ATEAQGRIHT SACTVAVMPE IPEAEIPEIK ASDLKIDTFR SSGAGGQHVN
TTDSAIRITH LPTGIVVECQ DERSQHKNKA KAMSVLAARI AQAEESKRAA EISDTRRNLL
GSGDRSDRIR TYNYPQGRVS DHRINLTVYR LTEVMEGDMQ SLIDPVIHEH QADQLAALAD
QN