Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1756 |
Symbol | prfA |
ID | 5136957 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1876730 |
End bp | 1877818 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640533213 |
Product | peptide chain release factor 1 |
Protein accession | YP_001217695 |
Protein GI | 147674456 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0216] Protein chain release factor A |
TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00000000801734 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCGT CGATTTTAAG CAAGCTTGAA TCCCTTGTTG AGCGCTATGA AGAGGTTCAG CACCTCCTTG GCGACCCAAC AGTTATCGGT GATCAAAATA AATTCCGTGC TCTATCCAAA GAGTATTCGC AACTGGAAGA GATCACTCAG TGTTTCCAAG CTTACCAACA AGCGAAGGAA GATCTGGTTG CTGCCGAAGA GATGGCACAA GAAGATGATG CAGAAATGCG TGAAATGGCA CAGGACGAGA TCAAAGCGGC GAAAGCGGCA ATTGAGCGCC TGACCGATGA ACTGCAAATT CTGTTGCTGC CAAAAGATCC AAACGATGAT CGCAACTGTT TCTTAGAAAT TCGCGCGGGT GCGGGTGGTG ACGAAGCGGG TATTTTTGCC GGCGATTTGT TCCGTATGTA CAGCCGTTTT GCGGAGAAAA AAGGCTGGCG CATCGAAGTG ATGTCATCGA GTGAAGCGGA ACACGGCGGC TACAAAGAGA TGATCGCGAA AGTGAACGGT GACGGTGCTT ACGGTACGCT CAAGTTTGAA TCTGGCGGCC ACCGAGTGCA ACGTGTTCCG GCTACGGAAG CGCAAGGGCG TATCCACACG TCCGCTTGTA CCGTTGCGGT GATGCCTGAA ATTCCTGAAG CGGAAATTCC AGAAATCAAA GCCAGCGATC TGAAAATTGA TACGTTCCGC TCTTCTGGCG CGGGTGGTCA GCACGTTAAC ACCACCGATT CGGCTATCCG TATCACTCAC TTACCGACTG GTATTGTGGT CGAGTGTCAG GATGAGCGTT CGCAACATAA GAACAAAGCT AAAGCGATGT CAGTATTGGC TGCACGTATT GCTCAAGCTG AAGAGTCAAA ACGCGCTGCG GAAATTTCCG ATACACGCCG CAACCTTCTG GGTTCAGGCG ATCGTAGTGA CCGCATTCGC ACTTATAACT ACCCGCAAGG TCGAGTGTCC GATCACCGTA TCAATTTGAC GGTATATCGC CTGACCGAAG TGATGGAAGG GGATATGCAA TCCTTGATTG ACCCTGTGAT TCACGAGCAT CAAGCGGATC AATTGGCGGC ACTGGCGGAT CAAAACTAA
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Protein sequence | MKASILSKLE SLVERYEEVQ HLLGDPTVIG DQNKFRALSK EYSQLEEITQ CFQAYQQAKE DLVAAEEMAQ EDDAEMREMA QDEIKAAKAA IERLTDELQI LLLPKDPNDD RNCFLEIRAG AGGDEAGIFA GDLFRMYSRF AEKKGWRIEV MSSSEAEHGG YKEMIAKVNG DGAYGTLKFE SGGHRVQRVP ATEAQGRIHT SACTVAVMPE IPEAEIPEIK ASDLKIDTFR SSGAGGQHVN TTDSAIRITH LPTGIVVECQ DERSQHKNKA KAMSVLAARI AQAEESKRAA EISDTRRNLL GSGDRSDRIR TYNYPQGRVS DHRINLTVYR LTEVMEGDMQ SLIDPVIHEH QADQLAALAD QN
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