Gene VC0395_A1724 details

Gene Information

• Locus tag: VC0395_A1724
• Symbol: fliD
• ID: 5136478
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1846829
• End bp: 1848829
• Gene Length: 2001 bp
• Protein Length: 666 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640533181
• Product: flagellar capping protein
• Protein accession: YP_001217663
• Protein GI: 147675440
• COG category: [N] Cell motility
• COG ID: [COG1345] Flagellar capping protein
• TIGRFAM ID: [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.0724566
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTTAG GCCCGATGGG GATGAATACT GGCTTTGACA TCAATGGCAT GGTCAGCAAA 
ATTGTCAGTG CGGAGCGCGT ACCTAAGCAG CAACGCATTG ACAATGAGCG TACCAACATT 
GACACCAGTA TCAGCGCCTA TGGTCGGCTC AGAGAGTCGC TGGATACGAT GAAAAATCTG 
ATGACCCAGT TTCGTCAGGA GAAGGCTTTT GCAGTACGCA AAGTCGACAC CAGTAACGAA 
CAGGTTGTCT CCGCGACGGC CACCACGGAA GCTATTGCTG GCAACTACTC CGTCGATGTG 
TTGCAGCTTG CTCAAAGCCA TAAAATTGCG TCTGAAGTAT TGGACAAAGA CGCGAAATTT 
GGTCCGGGCA AGCTGCATAT TTCATTGGGC GATAAGAGTT TTACGCTGGA TGTGCAAGGT 
AACTCCAAGC TGGTTGATAT TGTCCGTGGA ATCAATGGTG AAAAATCCAA TCCGGGCGTG 
CGAGCCTCCA TCATCAATGA TGTTGAAGGG CCGCGGCTGA TCGTTGCCTC TAACGTGTCA 
GGCAAAGATC ACAGCGTAAA AATGTCCGCT CAAGCGGAAC CCGGTAATCC ACTTAAGCAA 
CTCGAATACA AAACCCTCGA ACAGCGAGTT CGTGATTTAG AAAAAGCGCG TGCGCAAGCT 
CAGCAACTCA TCGCCCCACT CACCCCTGAA CAGCAAAAAG TCGCCGCCAA AGTCGCGGAA 
AAAATTGGCG ATGCTGCTCG GCTGGTCGAT CAAGAAGTCG CACAAGAAAT TCGAAGTGCC 
GCACAAAGTG CACAAGGTGC GGCCGGAGAG GCGCTCAACG CTGGTGAGTT AACCGAGAGT 
GCGGTAAAAG CCGCGGCTAA CGCCGCCAGT GAAGCCAAAA AATACATCAG GCCGGAAGAC 
CGAATTCCGG GCTGGACAGA AACCGCGTCC GGTACCTTGC TCGATTCCTA TTGGGAACCG 
GAAGAAGAAC TCGACGCTCA AGGTCAAAAA AAGGCCGCTG ACGTTCCCGG ATGGAGCAAC 
ACCGCATCCG GTACACTGCT TGATTCCTAC GTCACGCCGC AAGAAGCGCA GCAAAAGCTA 
GAACAGAAAT TAGCGCAAGA GAAGGCGCAG ATTGAAGCGG CGATCCGCAG CGGAAAAATG 
ACGCCAGAAG AGGCCAAAGC CCAAGCGCGC GCGAAACTTA GCCCAGAAGA GCGTGCCTAC 
ATTGAACAGG TCGAAAAAGC GCAAGCAGCC TTGAATGCGG CGCAAAGTGC CTTTGATGGC 
TACGGCGGCA TGACCGAAGT GCAATCGGCG CAAGACTCTA TGGTGGTGCT GGATGGGGTG 
GCGACCTTAT CGAGCAATAA CAACATCATC GAAAATGCGA TCGAAGGGGT TAACTTAACC 
CTCAAAGGCA AAACCGATCG CAATCAGCCT CCCGCGGAAA TCGGCATTGA ATATGACCGC 
GAACGAGTGC GTAACGACAT TGAACAGTTT GTCGCGGCCT ATAATCAGTT TTTCCAAACC 
AGTAAAGAGC TCGCGGGTGT TGATCCACGA ACCGGACAAG CCGGTCCTTT AGCGGGTGAC 
AGCATAGTTC GTAGCGCAGA CTCACGATTA AAAACGGTCT TCTCATCGAG CATTGAGCAA 
GCGCCAGAAA ACCTCAAATC ACTGACTGAG TTTGGGATCA CCACCACCCG ACAAGGGACG 
CTAGAAATCA ACTATGCTAT GCTTGACCGC CAATTGAATA ACAACTTCAC TAAGTTGGGT 
GAGTTTTTTG GCGGCAATCA AGGCTTTGCT AAGCGGGTCG AAGATGCGAT TTCGAGCATG 
ACTGGGGTTA CGGGTTCAAT CCGTACCCGA GAAAAGAGCT TGAATGAACA GACTTACCGA 
TTGGATGACG ACCAACGTTC TCTCGACCGC CGGATGGAGA GTTTGGAAAA ACGGACCCAT 
GCGAAATTCA GTGCCATGCA AGATGCGACC AGCAAGATGC AATCGCAGTT AGCGGGCATG 
ATGAACGCTT TAGGTGGTTA A 

 

Protein sequence

MSLGPMGMNT GFDINGMVSK IVSAERVPKQ QRIDNERTNI DTSISAYGRL RESLDTMKNL 
MTQFRQEKAF AVRKVDTSNE QVVSATATTE AIAGNYSVDV LQLAQSHKIA SEVLDKDAKF 
GPGKLHISLG DKSFTLDVQG NSKLVDIVRG INGEKSNPGV RASIINDVEG PRLIVASNVS 
GKDHSVKMSA QAEPGNPLKQ LEYKTLEQRV RDLEKARAQA QQLIAPLTPE QQKVAAKVAE 
KIGDAARLVD QEVAQEIRSA AQSAQGAAGE ALNAGELTES AVKAAANAAS EAKKYIRPED 
RIPGWTETAS GTLLDSYWEP EEELDAQGQK KAADVPGWSN TASGTLLDSY VTPQEAQQKL 
EQKLAQEKAQ IEAAIRSGKM TPEEAKAQAR AKLSPEERAY IEQVEKAQAA LNAAQSAFDG 
YGGMTEVQSA QDSMVVLDGV ATLSSNNNII ENAIEGVNLT LKGKTDRNQP PAEIGIEYDR 
ERVRNDIEQF VAAYNQFFQT SKELAGVDPR TGQAGPLAGD SIVRSADSRL KTVFSSSIEQ 
APENLKSLTE FGITTTRQGT LEINYAMLDR QLNNNFTKLG EFFGGNQGFA KRVEDAISSM 
TGVTGSIRTR EKSLNEQTYR LDDDQRSLDR RMESLEKRTH AKFSAMQDAT SKMQSQLAGM 
MNALGG