Gene VC0395_A1708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1708 
SymbolfliN 
ID5135803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1831678 
End bp1832094 
Gene Length417 bp 
Protein Length138 aa 
Translation table11 
GC content50% 
IMG OID640533165 
Productflagellar motor switch protein 
Protein accessionYP_001217647 
Protein GI147674715 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1886] Flagellar motor switch/type III secretory pathway protein 
TIGRFAM ID[TIGR02480] flagellar motor switch protein FliN 


Plasmid Coverage information

Num covering plasmid clones60 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAGATGG CAAAAAGCGA AGATGAAAGA CTGGCCGAAG AATGGGCTGC CGCACTGGGG 
GAAGACCCTA ATGCGCCTGA TATTGATGTG GATGAAATCT TAGCCGCACC ACTTGAAGAG
CTGAAAAACA CGGCGCCCCC AATTACGGAT GACGAGCGCC GTAAGCTCGA TACCATTATG
GATATTCCGG TGACCATCTC GATGGAAGTC GGGCGCTCTA AAATCAGCAT TCGTAACCTG
CTGCAATTGA ACCAAGGTTC GGTGGTGGAG TTGGATCGGA TTGCCGATGA GTCACTCGAT
GTGATGGTTA ACGGCACGCT GATTGCGCAT GGCGAAGTGG TGGTGGTGAA CGATAAGTTT
GGTATCCGCC TCACCGACGT GATAAGTCAA ACCGAACGTA TCAAGAAATT GAGATAG
 
Protein sequence
MKMAKSEDER LAEEWAAALG EDPNAPDIDV DEILAAPLEE LKNTAPPITD DERRKLDTIM 
DIPVTISMEV GRSKISIRNL LQLNQGSVVE LDRIADESLD VMVNGTLIAH GEVVVVNDKF
GIRLTDVISQ TERIKKLR