Gene VC0395_A1679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1679 
Symbol 
ID5136678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1807600 
End bp1808370 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content46% 
IMG OID640533136 
Producthypothetical protein 
Protein accessionYP_001217618 
Protein GI147674477 
COG category[S] Function unknown 
COG ID[COG0327] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00486] dinuclear metal center protein, YbgI/SA1388 family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.00563581 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTACA AGATGAACAA TTTACAGCTA GAAGCGTTGC TAAATGAGAC ATTGTCCCCA 
CAGTTAATTA AAGATTATTG TCCTAATGGT TTACAAGTCG AAGGTAAAGT GGAAGTCAAA
CGAATTGTCA CCGGTGTGAC CGCTAGCATG GCTTTAATTG AAGCTGCGAT TGAGTTGAAA
GCTGATGCTC TTCTGGTTCA CCACGGCTAT TTTTGGAAAA ATGAACCCGA GGCCATTCGA
GGTATGAAAG GTCGCCGGAT ACGTACGCTT ATCCAAAATG ATCTTAATCT GTATGCCTAC
CATCTACCTT TGGATATTCA TCCACAGTTG GGCAACAATG CTCAGCTTGC GCAGCGACTC
GGGATTTGCG TTGATGGTGG GTTGGAAGGG CATCCTCAAT CAGTTGCGAT GTTTGGGCAC
TTTTTACAAC CGTTAACCGG AGAAGAATTA GCTCATCGGA TTGGCCAAGT CCTGAATCGT
ACTCCTTTGC ATATTGCTCC CGATCAAGCC GATAAGCTGA TTGAAACTGT CGGTTGGTGT
ACGGGTGGTG GGCAAGACTA TATTGAACTC GCGGCTAGCC GAGGTTTAGA TGCCTTTATT
TCTGGAGAAA TCTCGGAGCG TACAACCTAT TCGGCACGTG AACAGTCGAT CCATTACTTT
TCCGCAGGTC ACCATGCTAC CGAGCGCTAC GGAATTAAAG CACTAGGGGA ATGGCTCGCG
GAAAATCACG GCTTTGATGT GACCTTCATT GATATTGATA ATCCAGTTTA G
 
Protein sequence
MDYKMNNLQL EALLNETLSP QLIKDYCPNG LQVEGKVEVK RIVTGVTASM ALIEAAIELK 
ADALLVHHGY FWKNEPEAIR GMKGRRIRTL IQNDLNLYAY HLPLDIHPQL GNNAQLAQRL
GICVDGGLEG HPQSVAMFGH FLQPLTGEEL AHRIGQVLNR TPLHIAPDQA DKLIETVGWC
TGGGQDYIEL AASRGLDAFI SGEISERTTY SAREQSIHYF SAGHHATERY GIKALGEWLA
ENHGFDVTFI DIDNPV